Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30360
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   126   1e-29
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   126   1e-29
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    27   8.6  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  126 bits (304), Expect = 1e-29
 Identities = 57/102 (55%), Positives = 69/102 (67%)
 Frame = +2

Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
           + G +  E  IPVD+VF +DEMID I            +RW   +LPRK H+GLRKVACI
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255

Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMA 541
           GAWHP+RVS+TVARAGQ GYHHRT MNKK+Y + K   +  A
Sbjct: 256 GAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHA 297



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
 Frame = +3

Query: 3   RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLK-QRQ 179
           RFYKNW              +  + G+K I    +KM +Y S+VRVIAHTQ++ +K  +Q
Sbjct: 117 RFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQ 176

Query: 180 KKAHIMEIQLNGGTIEDKVKW 242
           KKAH+MEIQ+NGGTI DKV +
Sbjct: 177 KKAHLMEIQINGGTIADKVDY 197


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  126 bits (304), Expect = 1e-29
 Identities = 57/102 (55%), Positives = 69/102 (67%)
 Frame = +2

Query: 236 EMGQRTLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACI 415
           + G +  E  IPVD+VF +DEMID I            +RW   +LPRK H+GLRKVACI
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255

Query: 416 GAWHPSRVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMA 541
           GAWHP+RVS+TVARAGQ GYHHRT MNKK+Y + K   +  A
Sbjct: 256 GAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHA 297



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
 Frame = +3

Query: 3   RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLK-QRQ 179
           RFYKNW              +  + G+K I    +KM +Y SVVRVI HTQ++ +K  +Q
Sbjct: 117 RFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQ 176

Query: 180 KKAHIMEIQLNGGTIEDKVKW 242
           KKAH+MEIQ+NGGTI DKV +
Sbjct: 177 KKAHLMEIQINGGTIADKVDY 197


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 89  NRXXFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 205
           N   F  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,277
Number of Sequences: 37544
Number of extensions: 280665
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)