Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30360
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               127   6e-30
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   3e-08
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)          53   2e-07
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      29   3.8  
SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  127 bits (307), Expect = 6e-30
 Identities = 60/99 (60%), Positives = 69/99 (69%)
 Frame = +2

Query: 254 LEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPS 433
           LE P PV  VF+ DEMID I             RW TKKLPRK HKGLRKVACIGAWHP+
Sbjct: 201 LENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPA 260

Query: 434 RVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAKLL 550
           RVSF+VARAGQ GYHHRT +NKKIY + +   K+  K++
Sbjct: 261 RVSFSVARAGQAGYHHRTELNKKIYRIGQGIHKKDGKVI 299



 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 46/84 (54%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
 Frame = +3

Query: 3   RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
           RFYKNW              W D+ G+KSI + F  M +YC V+RVI HTQ KLLK RQK
Sbjct: 116 RFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQK 175

Query: 183 KAHIMEIQLNGG-TIEDKVKWARE 251
           KAHIMEIQ+NGG  + +KV W RE
Sbjct: 176 KAHIMEIQVNGGKDVAEKVDWCRE 199



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 511 IGQGIHKKDGKVIXXNASTEYDLSEKSIT 597
           IGQGIHKKDGKVI  NASTEYDL++KSI+
Sbjct: 287 IGQGIHKKDGKVIKNNASTEYDLTDKSIS 315


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +1

Query: 511 IGQGIHKKDGKVIXXNASTEYDLSEKSIT 597
           IGQGIHKKDGKVI  NASTEYDL++KSIT
Sbjct: 16  IGQGIHKKDGKVIKNNASTEYDLTDKSIT 44



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 470 GYHHRTXMNKKIYVLDKESTKRMAKLL 550
           GYHHRT +NKKIY + +   K+  K++
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVI 28


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/51 (45%), Positives = 28/51 (54%)
 Frame = +3

Query: 3   RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQ 155
           RFYKNW              W D+ G+KSI + F  M +YC V+RVI HTQ
Sbjct: 164 RFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 162 LLKQRQKKAHIMEIQLNGGTIEDKV-KWAREHWRXLS 269
           L K    K H   +  N G+++DKV KW R+ W  +S
Sbjct: 305 LFKDHFDKLHFSHLMNNKGSLQDKVLKWIRQAWDSIS 341


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 146 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTLEXP 265
           PH N +  T    G H  NPT    HR  S  GQ  +  P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGP 321


>SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 143 NDSYNTTVADHLLEXFXY*FASKLILPXLTGFSESLLLA 27
           N+ YN    DH++E +   F S L +  ++G  + LL+A
Sbjct: 385 NNHYNDFEGDHVMEDYLQAFESALEVQKMSGQLDLLLMA 423


>SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 331 FALGDTNAVNHFILGKHRIDRDRXLQCSLAHFTLSSMVPPLSW 203
           FA G+   + HF+     + RDR    +++ + +  + PP  W
Sbjct: 427 FANGNAGRLRHFLTNWKMLTRDRWTLNTISGYKIPFVRPPRQW 469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,270
Number of Sequences: 59808
Number of extensions: 327747
Number of successful extensions: 526
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)