Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30360
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 134 6e-32
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 134 6e-32
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 134 6e-32
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 134 6e-32
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 134 6e-32
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 134 6e-32
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 117 6e-27
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 117 6e-27
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 134 bits (323), Expect = 6e-32
Identities = 62/97 (63%), Positives = 69/97 (71%)
Frame = +2
Query: 254 LEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPS 433
LE + VD+VFAQDEMID I SRWHTKKLPRK HKGLRKVACIGAWHPS
Sbjct: 201 LEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260
Query: 434 RVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAK 544
RV+FTVARAGQ G+HHRT +N KIY + K + K
Sbjct: 261 RVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 297
Score = 110 bits (264), Expect = 8e-25
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFY NW WQDE G+K I F K+ +YCS +RVIAHTQMK+L++RQK
Sbjct: 117 RFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQK 176
Query: 183 KAHIMEIQLNGGTIEDKVKWAREH 254
KAH++EIQ+NGGTIE KV WAREH
Sbjct: 177 KAHLVEIQVNGGTIEQKVDWAREH 200
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 134 bits (323), Expect = 6e-32
Identities = 62/97 (63%), Positives = 69/97 (71%)
Frame = +2
Query: 254 LEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPS 433
LE + VD+VFAQDEMID I SRWHTKKLPRK HKGLRKVACIGAWHPS
Sbjct: 201 LEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260
Query: 434 RVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAK 544
RV+FTVARAGQ G+HHRT +N KIY + K + K
Sbjct: 261 RVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 297
Score = 110 bits (264), Expect = 8e-25
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFY NW WQDE G+K I F K+ +YCS +RVIAHTQMK+L++RQK
Sbjct: 117 RFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQK 176
Query: 183 KAHIMEIQLNGGTIEDKVKWAREH 254
KAH++EIQ+NGGTIE KV WAREH
Sbjct: 177 KAHLVEIQVNGGTIEQKVDWAREH 200
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 134 bits (323), Expect = 6e-32
Identities = 62/97 (63%), Positives = 69/97 (71%)
Frame = +2
Query: 254 LEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPS 433
LE + VD+VFAQDEMID I SRWHTKKLPRK HKGLRKVACIGAWHPS
Sbjct: 103 LEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 162
Query: 434 RVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAK 544
RV+FTVARAGQ G+HHRT +N KIY + K + K
Sbjct: 163 RVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 199
Score = 102 bits (244), Expect = 2e-22
Identities = 44/64 (68%), Positives = 54/64 (84%)
Frame = +3
Query: 63 WQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 242
WQDE G+K I F K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 243 AREH 254
AREH
Sbjct: 99 AREH 102
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 134 bits (323), Expect = 6e-32
Identities = 62/97 (63%), Positives = 69/97 (71%)
Frame = +2
Query: 254 LEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPS 433
LE + VD+VFAQDEMID I SRWHTKKLPRK HKGLRKVACIGAWHPS
Sbjct: 201 LEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260
Query: 434 RVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAK 544
RV+FTVARAGQ G+HHRT +N KIY + K + K
Sbjct: 261 RVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 297
Score = 110 bits (264), Expect = 8e-25
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFY NW WQDE G+K I F K+ +YCS +RVIAHTQMK+L++RQK
Sbjct: 117 RFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQK 176
Query: 183 KAHIMEIQLNGGTIEDKVKWAREH 254
KAH++EIQ+NGGTIE KV WAREH
Sbjct: 177 KAHLVEIQVNGGTIEQKVDWAREH 200
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 134 bits (323), Expect = 6e-32
Identities = 62/97 (63%), Positives = 69/97 (71%)
Frame = +2
Query: 254 LEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPS 433
LE + VD+VFAQDEMID I SRWHTKKLPRK HKGLRKVACIGAWHPS
Sbjct: 103 LEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 162
Query: 434 RVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAK 544
RV+FTVARAGQ G+HHRT +N KIY + K + K
Sbjct: 163 RVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 199
Score = 102 bits (244), Expect = 2e-22
Identities = 44/64 (68%), Positives = 54/64 (84%)
Frame = +3
Query: 63 WQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 242
WQDE G+K I F K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 243 AREH 254
AREH
Sbjct: 99 AREH 102
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 134 bits (323), Expect = 6e-32
Identities = 62/97 (63%), Positives = 69/97 (71%)
Frame = +2
Query: 254 LEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPS 433
LE + VD+VFAQDEMID I SRWHTKKLPRK HKGLRKVACIGAWHPS
Sbjct: 201 LEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260
Query: 434 RVSFTVARAGQXGYHHRTXMNKKIYVLDKESTKRMAK 544
RV+FTVARAGQ G+HHRT +N KIY + K + K
Sbjct: 261 RVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 297
Score = 110 bits (264), Expect = 8e-25
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLKQRQK 182
RFY NW WQDE G+K I F K+ +YCS +RVIAHTQMK+L++RQK
Sbjct: 117 RFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQK 176
Query: 183 KAHIMEIQLNGGTIEDKVKWAREH 254
KAH++EIQ+NGGTIE KV WAREH
Sbjct: 177 KAHLVEIQVNGGTIEQKVDWAREH 200
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 117 bits (282), Expect = 6e-27
Identities = 54/88 (61%), Positives = 60/88 (68%)
Frame = +2
Query: 281 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSFTVARA 460
V A +MID I SRWHTKKLPRK HKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 461 GQXGYHHRTXMNKKIYVLDKESTKRMAK 544
GQ G+HHRT +N KIY + K + K
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEGK 249
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQM 158
RFY NW WQDE G+K I F K+ +YCS +RVIAHTQM
Sbjct: 117 RFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 117 bits (282), Expect = 6e-27
Identities = 54/88 (61%), Positives = 60/88 (68%)
Frame = +2
Query: 281 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSRVSFTVARA 460
V A +MID I SRWHTKKLPRK HKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 461 GQXGYHHRTXMNKKIYVLDKESTKRMAK 544
GQ G+HHRT +N KIY + K + K
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEGK 249
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +3
Query: 3 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQM 158
RFY NW WQDE G+K I F K+ +YCS +RVIAHTQM
Sbjct: 117 RFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,839
Number of Sequences: 27780
Number of extensions: 241875
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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