Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30360
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   122   1e-28
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   122   1e-28
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   122   2e-28
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    28   4.1  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  122 bits (295), Expect = 1e-28
 Identities = 55/92 (59%), Positives = 66/92 (71%)
 Frame = +2

Query: 257 EXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSR 436
           E  IP+++VF +DEMID I            +RW   +LPRK H+GLRKVACIGAWHP+R
Sbjct: 203 EKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPAR 262

Query: 437 VSFTVARAGQXGYHHRTXMNKKIYVLDKESTK 532
           VS+TVARAGQ GYHHRT +NKKIY L K  T+
Sbjct: 263 VSYTVARAGQNGYHHRTELNKKIYRLGKVGTE 294



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLK-QRQ 179
           RFYKNW              +  E G+K I    +KM +Y +V+RV+AHTQ++ +K  +Q
Sbjct: 117 RFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQ 176

Query: 180 KKAHIMEIQLNGGTIEDKVKWA 245
           KKAH+MEIQ+NGGTI  KV +A
Sbjct: 177 KKAHMMEIQINGGTIAQKVDFA 198


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  122 bits (295), Expect = 1e-28
 Identities = 55/92 (59%), Positives = 66/92 (71%)
 Frame = +2

Query: 257 EXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSR 436
           E  IP+++VF +DEMID I            +RW   +LPRK H+GLRKVACIGAWHP+R
Sbjct: 203 EKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPAR 262

Query: 437 VSFTVARAGQXGYHHRTXMNKKIYVLDKESTK 532
           VS+TVARAGQ GYHHRT +NKKIY L K  T+
Sbjct: 263 VSYTVARAGQNGYHHRTELNKKIYRLGKVGTE 294



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLK-QRQ 179
           RFYKNW              +  E G+K I    +KM +Y +V+RV+AHTQ++ +K  +Q
Sbjct: 117 RFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQ 176

Query: 180 KKAHIMEIQLNGGTIEDKVKWA 245
           KKAH+MEIQ+NGGTI  KV +A
Sbjct: 177 KKAHMMEIQINGGTIAQKVDFA 198


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  122 bits (293), Expect = 2e-28
 Identities = 53/88 (60%), Positives = 64/88 (72%)
 Frame = +2

Query: 257 EXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXHKGLRKVACIGAWHPSR 436
           E  +PVD++F +DEMID I            +RW   +LPRK H+GLRKVACIGAWHP+R
Sbjct: 203 EKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPAR 262

Query: 437 VSFTVARAGQXGYHHRTXMNKKIYVLDK 520
           VS+TVARAGQ GYHHRT MNKK+Y + K
Sbjct: 263 VSYTVARAGQNGYHHRTEMNKKVYRVGK 290



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   RFYKNWYXXXXXXXXXXXXXWQDELGRKSIXKXFKKMIRYCSVVRVIAHTQMKLLK-QRQ 179
           RFYKNW               + E G+K I    +KM +YCSV+RV+AHTQ++ +K  +Q
Sbjct: 117 RFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQ 176

Query: 180 KKAHIMEIQLNGGTIEDKVKWA 245
           KKAH+ EIQ+NGG I  KV +A
Sbjct: 177 KKAHLNEIQINGGDIAKKVDYA 198


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 150 TQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHWRXLSLSILCLPK 293
           +++K L   +K  H++   ++G T  DK++ + E    L  SILC  K
Sbjct: 853 SKLKALPNLEKLTHLVIFDVSGCTNLDKIEESFESMSYLCESILCSSK 900


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,185,789
Number of Sequences: 28952
Number of extensions: 224425
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)