Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30357
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   1.8  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   5.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   7.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   7.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.2  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   9.5  

>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 29  NRLTGLTAAFAFQNRRRFPQIFSSEXTPSAWSGTTRSN*NAAYTYRRSAALS 184
           NR+ G  AA A  +      + SSE   S+ SG+ +SN +    ++   A+S
Sbjct: 57  NRVRGGVAAKATDSSSNVTSLASSEENVSSVSGSAKSNNSQQRVWKTDVAIS 108


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 306 MASVLQRNNAKLNIVWTMFPDTGSNNLSAILMNAPAELKALFRG*N 443
           ++S    +N  LN+  T F + G++N+S  L +AP+++ +L R  N
Sbjct: 704 VSSAYPHHNLALNLDNTQFGELGTSNISYPL-SAPSDVGSLPRASN 748


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = +3

Query: 282 IKNEKGERMASVLQRNNAKLNIVWTMFPDTGSNNLSAI 395
           + ++ GE+   ++ +   KL  ++ MFP   + ++ A+
Sbjct: 758 VSSKPGEQKVHIMYKEGHKLRRIYKMFPADSAGSICAV 795


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 40   GINSCVRLPEPSALPPDIFKRXHA 111
            G  SCV + +P+ LPP +  +  A
Sbjct: 1533 GCESCVMVGDPNQLPPTVLSKTSA 1556


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 388 DKLFEPVSGNIVQTMFSLALFLCKTDAIRSPFSFLILPALITSSKVVFSFGISLKRK 218
           DKL   V   I     +L L L     I+ P +FLI+ +++   K+  S  + +KR+
Sbjct: 464 DKLLPLVRFPIKLLEEALRLRLAYAKKIKGP-NFLIVDSMLDDFKIALSVAVRIKRE 519


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 214 LVCALKKYQMKKLPW 258
           L+C LK+YQ+K L W
Sbjct: 838 LMCKLKEYQLKGLNW 852


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 375 NPYRGT*SRQCLAWRYFSAKP 313
           NPYR   ++Q L   YFSA P
Sbjct: 276 NPYRRPTAQQALEHHYFSALP 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,735
Number of Sequences: 5004
Number of extensions: 55365
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)