Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30357
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0373 + 33468711-33468917,33469020-33469217 29 2.4
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475... 29 2.4
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 29 2.4
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331... 29 2.4
07_03_0607 + 19916946-19917479,19917543-19918010,19918092-199184... 29 3.2
02_05_0505 - 29605860-29606102,29606331-29606677,29607291-296074... 29 3.2
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 28 5.6
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455... 28 5.6
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 27 9.8
>03_06_0373 + 33468711-33468917,33469020-33469217
Length = 134
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 19 FHNKSFDGINSCVRLPEPSALPPDIFKRXHAIGLEWDNAVE 141
+H FDG SC +P+ AL P + K A + + V+
Sbjct: 46 YHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQ 86
>03_06_0372 +
33446153-33446665,33446744-33446993,33447347-33447501,
33447593-33447805,33447926-33448113,33448282-33448540
Length = 525
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 19 FHNKSFDGINSCVRLPEPSALPPDIFKRXHAIGLEWDNAVE 141
+H FDG SC +P+ AL P + K A + + V+
Sbjct: 148 YHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQ 188
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 19 FHNKSFDGINSCVRLPEPSALPPDIFKRXHAIGLEWDNAVE 141
+H FDG SC +P+ AL P + K A + + V+
Sbjct: 156 YHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQ 196
>03_06_0370 +
33431696-33432217,33432521-33432796,33433003-33433183,
33433253-33433455,33433545-33433732,33433844-33434105
Length = 543
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 19 FHNKSFDGINSCVRLPEPSALPPDIFKRXHAIGLEWDNAVE 141
+H FDG SC +P+ AL P + K A + + V+
Sbjct: 151 YHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQ 191
>07_03_0607 +
19916946-19917479,19917543-19918010,19918092-19918479,
19919025-19919076,19919294-19919333
Length = 493
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 116 PMA*XRLKISGGSADGSGRRTQL-LIPSNDL 27
P A R ++SGG DG GRR L ++P + +
Sbjct: 98 PRALSRFRLSGGVGDGRGRRNALSMVPGDSM 128
>02_05_0505 -
29605860-29606102,29606331-29606677,29607291-29607472,
29609540-29610282
Length = 504
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 246 KTTLELVIKAGKIKNEKGERMASVLQRNNAKL-NIVWTMFPDTGSN 380
KTT+E +++ IKN G +A L NA NIV +F TG +
Sbjct: 346 KTTVEKLVELNIIKNLAGSAVAGALGGFNAHASNIVTALFIATGQD 391
>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 355 VQTMFSLALFLCKTDAIRSPFSFLILPALITSSKVVF 245
+QT F + DA+RS F I+PA S K +F
Sbjct: 1099 IQTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMF 1135
>02_05_0869 -
32344821-32344916,32345255-32345347,32345418-32345551,
32345863-32346013,32346337-32346407,32346683-32346828,
32347172-32347221,32347552-32347628,32347716-32347776,
32347859-32347912,32347999-32348058,32348491-32348624,
32349740-32350418
Length = 601
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 222 RFKEIPNEKTTLELVIKAGKIKNEKGERMASVLQRNNAK----LNIVWTMFPDTGSNNLS 389
R ++P EKT L V K++N+ E+ S + N A +N V+ + + +S
Sbjct: 482 RQNDVPKEKTCLPEVKAKPKVQNKGAEKTQSKIPTNGANVEKFVNDVFDIMSPLFLSEVS 541
Query: 390 AILMNAPAELKALFRG 437
L EL ++F G
Sbjct: 542 KKLNVKQEELSSIFDG 557
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 48 QLRSPSRTVGASPRYFQAXSRHRPGVGQR 134
QL S S + A+ F SRHRPG+ +R
Sbjct: 996 QLTSRSGSTVAAHEIFDGRSRHRPGLDKR 1024
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,397
Number of Sequences: 37544
Number of extensions: 346960
Number of successful extensions: 761
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -