Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30357
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_45777| Best HMM Match : VPEP (HMM E-Value=5.2) 29 3.3
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 29 3.3
SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21) 29 3.3
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05) 28 5.7
SB_59367| Best HMM Match : VWA (HMM E-Value=0) 28 5.7
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 28 5.7
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 28 7.6
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 32.3 bits (70), Expect = 0.35
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +3
Query: 195 NIRGLPSRLRFKEIPNEKTTLELVIKAGKIKNE---KGERMASVLQRNNAKLNIVWTMFP 365
NI L S ++ ++IPN+K ++ + G +KNE E S LQR + T+
Sbjct: 61 NIIDLSSEIKHEKIPNDKL---IISEYGHMKNELLKLQEEYESSLQRERTACERLQTVHK 117
Query: 366 DTGSN--NLSAILMNAPAELKALFRG*NCDCDSYKSL 470
+ S LS + AEL +L + N D K L
Sbjct: 118 EADSKIYRLSQVNEELKAELDSLIKESNFSKDKLKRL 154
>SB_45777| Best HMM Match : VPEP (HMM E-Value=5.2)
Length = 94
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +3
Query: 123 VGQRGRIKMPLILIGGQRR*ALP*NIRGLPSRLRFKEIPNEKTTLELVIKAG----KIKN 290
VG R+ +P+ L+G R A+P + G L IP L L++ K KN
Sbjct: 8 VGNVTRMAVPITLVGNVTRMAVPITLVG---NLTMGAIPITLVVLALMVGMAFYYRKYKN 64
Query: 291 -EKG-ERMASVLQRNNAKLNIVW 353
EK M+S+ + +N +LNIV+
Sbjct: 65 LEKHYTNMSSIYRAHNDELNIVY 87
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 129 VPLQADGVXSLENIWGKRRRFWKANAAVNPVKRFI 25
V + +DG +L W K R W NA V +RF+
Sbjct: 106 VVMSSDGQFALSGSWDKTLRLWDLNAGVT-TRRFV 139
>SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21)
Length = 123
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 129 VPLQADGVXSLENIWGKRRRFWKANAAVNPVKRFI 25
V + +DG +L W K R W NA V +RF+
Sbjct: 69 VVMSSDGQFALSGSWDKTLRLWDLNAGVT-TRRFV 102
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +3
Query: 306 MASVLQRNNAKLNIVWTMFPDTGSNNLSAILMNAPAELKALFRG*NCDCDSYKSLNTTND 485
M L R +A N T +P TG + S M+ A A G +CD Y ND
Sbjct: 895 MNECLMRMSA-YNFPSTTYPPTGVTSSSGEAMDVTASPSAPCNGFSCDSPPYSKCVVQND 953
Query: 486 R 488
+
Sbjct: 954 K 954
>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
Length = 974
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 198 IRGLPSRLRFKEIPNEKTTLELVIKAGKIKNEKGERMASVLQRN 329
++GL LR +I N + LEL+ G + E+ + +QRN
Sbjct: 894 VKGLHINLRTADIVNLSSMLELLCVEGAVAEERHMTLPYTIQRN 937
>SB_59367| Best HMM Match : VWA (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 237 PNEKTTLELVIKAGKIKNEKGERMASV--LQR-NNAKLNIVWTMFP-DTGSNNLSAILMN 404
P+ K L +VI G+ KN K E M SV L+R + + ++ P D LSA+ N
Sbjct: 540 PDAKRFL-VVIMDGRSKNTKEELMKSVVPLERLPSGHVKVITVPIPPDANEQELSAVASN 598
Query: 405 APAELKALFR 434
+KA+ +
Sbjct: 599 KDNVIKAMIK 608
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 198 IRGLPSRLRFKEIPNEKTTLELVIKAGKIKNEKGERMASVLQRN 329
++GL LR +I N T LEL+ G + E+ + +QRN
Sbjct: 845 VKGLHINLRTADIVNLTTMLELLRFEGAVAEERHVTLLYTIQRN 888
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 90 IWGKRRRFWK--ANAAVNPVKRFIVKSL 13
+WG+ RRFW+ N N +++F ++ L
Sbjct: 1335 VWGRDRRFWRKHLNVDFNRLRKFALREL 1362
>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 198 IRGLPSRLRFKEIPNEKTTLELVIKAGKIKNEKGERMASVLQRN 329
++GL LR +I N + LEL+ G + E+ + +QRN
Sbjct: 849 VKGLHINLRMADIVNLTSMLELLRVEGAVAEERHVTLPYTIQRN 892
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,548,591
Number of Sequences: 59808
Number of extensions: 401407
Number of successful extensions: 1085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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