Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30357
         (652 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M21329-1|AAA28608.1|  916|Drosophila melanogaster protein ( D.me...    29   4.1  
BT025953-1|ABG02197.1|  352|Drosophila melanogaster IP15285p pro...    29   4.1  
AE014297-3375|AAS65198.1|  920|Drosophila melanogaster CG10367-P...    29   4.1  
AE014297-3374|AAF56175.1|  920|Drosophila melanogaster CG10367-P...    29   4.1  
AE013599-660|AAF59081.2| 1264|Drosophila melanogaster CG30361-PA...    29   4.1  

>M21329-1|AAA28608.1|  916|Drosophila melanogaster protein (
           D.melanogaster 3-hydroxy-3-methyglutaryl coenzyme A
           reductase (HMG CoA) gene, completecds. ).
          Length = 916

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 KTTLELVIKAGKIKNEKGERMASVLQRNNA-KLNIVWTMFPDTGSN 380
           KT  + +++  K+KN  G  MA  +  NNA   N+V  +F  TG +
Sbjct: 744 KTDAKTLVECNKLKNMGGSAMAGSIGGNNAHAANMVTAVFLATGQD 789


>BT025953-1|ABG02197.1|  352|Drosophila melanogaster IP15285p
           protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +3

Query: 69  TVGASPRYFQAXSRHRPGVGQRGRIKMPLILIGGQRR*ALP*NIRGLPSRLRFKEIPNEK 248
           T   SP   Q     RP VGQ  RI +  I+     R  +P       +           
Sbjct: 173 TAATSPTREQHTLPPRPAVGQMARINVAAIIEDQIGRAVIPSTTNKAETPATPSTTSTST 232

Query: 249 TTLELVI-KAGKIKNEKGERMASVLQRNNAKLN 344
            T E+++ K  + +++K  ++   +QR++ K N
Sbjct: 233 PTTEIILAKTKRSESDKTNKIGQSVQRDDIKFN 265


>AE014297-3375|AAS65198.1|  920|Drosophila melanogaster CG10367-PB,
           isoform B protein.
          Length = 920

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 KTTLELVIKAGKIKNEKGERMASVLQRNNA-KLNIVWTMFPDTGSN 380
           KT  + +++  K+KN  G  MA  +  NNA   N+V  +F  TG +
Sbjct: 748 KTDAKTLVECNKLKNMGGSAMAGSIGGNNAHAANMVTAVFLATGQD 793


>AE014297-3374|AAF56175.1|  920|Drosophila melanogaster CG10367-PA,
           isoform A protein.
          Length = 920

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 KTTLELVIKAGKIKNEKGERMASVLQRNNA-KLNIVWTMFPDTGSN 380
           KT  + +++  K+KN  G  MA  +  NNA   N+V  +F  TG +
Sbjct: 748 KTDAKTLVECNKLKNMGGSAMAGSIGGNNAHAANMVTAVFLATGQD 793


>AE013599-660|AAF59081.2| 1264|Drosophila melanogaster CG30361-PA,
           isoform A protein.
          Length = 1264

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +3

Query: 69  TVGASPRYFQAXSRHRPGVGQRGRIKMPLILIGGQRR*ALP*NIRGLPSRLRFKEIPNEK 248
           T   SP   Q     RP VGQ  RI +  I+     R  +P       +           
Sbjct: 68  TAATSPTREQHTLPPRPAVGQMARINVAAIIEDQIGRAVIPSTTNKAETPATPSTTSTST 127

Query: 249 TTLELVI-KAGKIKNEKGERMASVLQRNNAKLN 344
            T E+++ K  + +++K  ++   +QR++ K N
Sbjct: 128 PTTEIILAKTKRSESDKTNKIGQSVQRDDIKFN 160


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,018,994
Number of Sequences: 53049
Number of extensions: 585007
Number of successful extensions: 1349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)