Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30357
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 469 SIRQMIGFFMTIHTYILIL 525
           +I + + FF+ I TYI+IL
Sbjct: 406 AIIEWLSFFIVIFTYIIIL 424


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -2

Query: 87  WGKRRRFWKANAAVNPVKR 31
           WG    +W     VNP  R
Sbjct: 98  WGSCNNYWNTKNCVNPYDR 116


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 334 ALFLCKTDAIRSPFSFLILPALITSS 257
           A+++ K      PFSFLIL  +  S+
Sbjct: 356 AIYIDKVSRFFFPFSFLILNVVYWST 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,818
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)