Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30357
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16120.1 68417.m02443 phytochelatin synthetase-related contai...    29   3.5  
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    28   6.2  

>At4g16120.1 68417.m02443 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region; supporting cDNA gi|26449620|dbj|AK117261.1|
          Length = 661

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   GAQAKRFHNKSFDGINSCVRLPEPSALPP 87
           G QAK + +  F  + SC R P    LPP
Sbjct: 282 GPQAKHYQDLDFSNVLSCARRPTVIDLPP 310


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 366 DTGSNNLSAILMNAPAELKALFRG*NCDCDSYKSLNTTNDRFLYD 500
           DT    L  ILMNA  + K + R  + +C S   +    DRF  D
Sbjct: 544 DTVMPYLKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKED 588


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,714,742
Number of Sequences: 28952
Number of extensions: 280147
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)