Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30356
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 95 5e-21
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 94 1e-20
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 66 3e-12
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 32 0.052
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.28
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 29 0.48
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 27 1.9
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 2.6
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 26 2.6
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 26 3.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 3.4
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 3.4
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 4.5
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.5
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 5.9
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 5.9
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 7.8
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 7.8
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/82 (51%), Positives = 58/82 (70%)
Frame = +2
Query: 8 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNXTIKWLDSNQLA 187
ED+ + IQAKN LESY +S++++++D LK+K+ SDK+ I TI+WLD N A
Sbjct: 526 EDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTA 585
Query: 188 DKEEYEHKQKELEGICNPIITK 253
K+EYE KQKELEG+ NPI+ K
Sbjct: 586 AKDEYEDKQKELEGVANPIMAK 607
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 93.9 bits (223), Expect = 1e-20
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +2
Query: 8 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNXTIKWLDSNQLA 187
ED+ + IQAKN LESY +S++++++D LK+K+ SDK+T+ TI+WLDSN A
Sbjct: 526 EDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTA 585
Query: 188 DKEEYEHKQKELEGICNPIITK 253
K+E+E KQKELE + NPI+ K
Sbjct: 586 AKDEFEAKQKELESVANPIMAK 607
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 66.1 bits (154), Expect = 3e-12
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 EDDKQKETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILDKCNXTIKWLD-SNQ 181
ED KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD +WL+ +
Sbjct: 556 EDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGE 615
Query: 182 LADKEEYEHKQKELEGICNPIITK 253
A KEE+E ++++L+ + +PI K
Sbjct: 616 DASKEEFEDQRQKLDAVVHPITQK 639
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 31.9 bits (69), Expect = 0.052
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 239 PIITKSTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPTFHTT 394
P++T T+ E+SP+ A +H + + P ++ PS RS K +F+++
Sbjct: 61 PLVTSKTKESEKSPKSWSAIAKKHVQGDSPVKKSHSVPVPSDRSEKKSFNSS 112
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.5 bits (63), Expect = 0.28
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 101 KEKISDSDKQTILD-KCNXTIKWLDSNQLADKEEYEHKQKELE 226
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 28.7 bits (61), Expect = 0.48
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +2
Query: 26 ETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNXTIKWL-DSNQLADKEEY 202
ET+ KNALE Y + ++ + D+ ++ + + WL + + K Y
Sbjct: 575 ETVDRKNALEEYIYDTRAKL-DDIYAPFTNEEESSKFKEMLTKAEDWLYEEGEDTTKAVY 633
Query: 203 EHKQKELEGICNPIITKSTRVPEESPEVCRASR 301
K ++L + PI + E + +A R
Sbjct: 634 TAKLEDLMRVGGPIRQRYLDAEEAKRQKVQAER 666
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/75 (20%), Positives = 30/75 (40%)
Frame = +2
Query: 182 LADKEEYEHKQKELEGICNPIITKSTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPS 361
+ D EE E K + +EG N +++ + E ++ A + +PE + A +
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKPAESREQLESAEQTNGVKPETQAQNMSASESQA 432
Query: 362 RRSIKPTFHTTRKPT 406
P +P+
Sbjct: 433 NSPAPPVEEGNTQPS 447
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 269 EESPEVCRASRAEHPEPE 322
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 2.6
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 8/141 (5%)
Frame = +2
Query: 17 KQKETIQAKNALESYCFSMKSTMED----EKLKEKISDSDKQTILDKC-NXTIKWLDSNQ 181
K +T++A N S K + EK++EK+++ DK ++ D + IK ++
Sbjct: 761 KNNQTVEAVNTETSDKLQEKEANHELENIEKIEEKLTEVDKVSLSDAFPDQEIKNSRTSV 820
Query: 182 LADKEEYEHKQKELEGICNPIITKSTRVPEESPEVCRASRA---EHPEPEVPPPGLEALA 352
E E + I S + E SP C S A + E EV L ++
Sbjct: 821 QNGTRSVSKNTPEKETKVDKIDNVSKKDVETSPGSCETSSAFAKTYAEKEVTSINLPSVR 880
Query: 353 PPSRRSIKPTFHTTRKPTCNN 415
P S + P C +
Sbjct: 881 KPLDESYYDHSISPFDPLCQS 901
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 8 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNXTIKWL 169
E DK ET+ K A+ S+ +++++++ K+S D L+ CN + L
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +2
Query: 239 PIITKSTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPP 358
P + T P P A P P PPPG+ PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 2 RNEDDKQKETIQAKNALESYCFSMKST 82
RN+ +KQ TI KNA++ Y S+K T
Sbjct: 255 RNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 4.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 170 DSNQLADKEEYEHKQKELEGICNPIITKSTRVPEESPEVCRASRAEHPEPEVPPPGLEAL 349
D+ + E E K+ G P++ ST E + +AS E V PG+ +
Sbjct: 146 DNEHRDEMEGLEKVMKQRAGNTGPLVANSTEEFEAWKRMMKASSGEAGAGNVITPGVTST 205
Query: 350 --APPSRRSI 373
AP + S+
Sbjct: 206 TGAPSGKASL 215
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 4.5
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Frame = +2
Query: 113 SDSDKQTILDKCNXTIKWLD--SNQLAD---KEEYEHKQKELEGICNPIITKSTRVPEES 277
S S + + LDK N K ++ +N+ KE+ Q E +I ST P+E
Sbjct: 370 SSSSEPSNLDKINDVKKNIEVSANEPQPRPVKEDVPKSQVGGETDTTDVINNST--PKEE 427
Query: 278 PEVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPT 382
E ++ E PP E P S KP+
Sbjct: 428 TEESPSTELPETGKEQPPNKAEPAVPTEASSTKPS 462
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 41 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNXTIKW 166
K E YC S+ ST + + K +SD T+L T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 308 HPEPEVPPPGLEALAPPSRRSIKPTFHTTRKPTCNNHLVTS 430
H +P +L+PPS R++KP H+ P+ + L S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 263 VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 370
V +SP R SR P E P A PPSRR+
Sbjct: 891 VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 7.8
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +2
Query: 35 QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNXTIKWLDSNQLADKEEYEHKQ 214
+A+ A + +E EK KEK D D++ T+ D NQ+ D+ E K+
Sbjct: 254 KAREARRRRSAQNSAKLEKEKAKEKQKDKDQE------QDTVS--DKNQI-DEIEKGQKE 304
Query: 215 KELEGICNPIITKSTRVPEESPEVCR 292
+ E + P T S +P ++ E R
Sbjct: 305 VDEEPVSEP--TTSPILPPKNQEPIR 328
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 68 SMKSTMEDEKLKEKISD 118
S+K MEDEKL EK+++
Sbjct: 114 SLKLIMEDEKLIEKVNE 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,809
Number of Sequences: 5004
Number of extensions: 29692
Number of successful extensions: 162
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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