Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30352
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.67 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.67 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 188 VTFLLVLAGFTVVLDVNFLLPTVV 117
           +TF +++   T+   VN +LPTV+
Sbjct: 223 ITFYIIIRRKTLFYTVNLILPTVL 246


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 25  QKQTTKVLKPTTQSSSITPKSATRKVTSVASTTVGSKKLTS-STTVKPAS 171
           Q    +  +PT+ ++S+TP    ++    A+  + ++KL + S+   P S
Sbjct: 81  QADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTS 130


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 90  CTLRCDGTGLSRRLKDLGGLFLGWARGTSG 1
           C   C G     RL ++  + L W  G+SG
Sbjct: 164 CLENCTGYQQYLRLLEVPQINLEWGEGSSG 193



 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 380 LTSQPSNDQHAAVTSPSHH 324
           LTSQP  D +   +  +HH
Sbjct: 49  LTSQPHQDHNKEKSKNNHH 67


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 163 VLL*CWMLIFYSQLWS 116
           V + CW+  F   LWS
Sbjct: 343 VFIICWLPFFVVNLWS 358


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 105 VCRFDHSW 128
           VC +DH+W
Sbjct: 158 VCEYDHTW 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,023
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)