Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30347
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   8.4  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.4  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 334 AFGSFRSSFVYDLVVSPSASLRPPRSTGH*LCLYTHS 444
           A+ SF  +F  DL ++P A+   P    H LC+Y ++
Sbjct: 532 AWRSFPPTF--DLTITPRATTTTPDILIHSLCVYLYN 566


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 111 KARPERRTERRFXYSK 64
           +++PERRT R+F Y K
Sbjct: 546 ESKPERRTFRKFPYPK 561


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 405 PEHRSLTLLIYSLSYG 452
           PE R L +L YS+SYG
Sbjct: 183 PESRRLFILSYSISYG 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,568
Number of Sequences: 5004
Number of extensions: 26989
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)