Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30347
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41353| Best HMM Match : HLH (HMM E-Value=1.2)                       29   2.8  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         28   4.9  
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_31095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     27   8.6  
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)           27   8.6  

>SB_41353| Best HMM Match : HLH (HMM E-Value=1.2)
          Length = 500

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 317 C*AFVQRLVRSEVRSFT----I*LCHRRPRSGPPGAPVTNSAYILT 442
           C   VQ L+  E  SF     I LC R P +  PG PV+N  Y+LT
Sbjct: 426 CALVVQHLIFKEGDSFPNESLIVLCDR-PAARFPGLPVSNVLYVLT 470


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 363 LRSSCVTVGLAPAPPEHRSLTLLIYSLSYGP 455
           L S+ V++  +P PPE+ +  LL YSL   P
Sbjct: 295 LNSTAVSLNWSPIPPEYANAPLLGYSLIATP 325


>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 44  AGSVSFPLEYXNRRSVLRSGRAFPAGTFSL-IPGPXXXXXXXXRESKHKSIQK 199
           A S+SFP E   RRS+  SG  FP+GT  L   GP        R +    ++K
Sbjct: 438 AESLSFPDE-EKRRSLDVSGLHFPSGTSGLYTEGPTARVPALRRRASSGDLEK 489


>SB_31095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 79  PSFCSSFRTSLPRWNVLVNTGSEXXDYIDYSRI 177
           P+     RTS   W V  N  S   DYIDY R+
Sbjct: 69  PNLELPLRTS-SHWRVTCNFASTKIDYIDYLRV 100


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 140 PVLTRTFQRGRLVRNEEQNDGLXIPREMK-RYP 45
           P      QRG L +NEE+  G+    E K RYP
Sbjct: 746 PTQNEEKQRGILTQNEEKQSGILTQNEEKQRYP 778


>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
          Length = 925

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +2

Query: 374 LCHR---RPRSGPPGAPVTNS 427
           LCHR   + R GPPGAP T +
Sbjct: 653 LCHRTNKKRRDGPPGAPPTQT 673


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,339,048
Number of Sequences: 59808
Number of extensions: 205447
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)