Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30347
         (497 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40317-1|AAC50567.1| 1911|Homo sapiens PTPsigma protein.               32   0.96 
U35234-1|AAC50299.1| 1948|Homo sapiens protein tyrosine phosphat...    32   0.96 
AC005788-1|AAC62834.1| 1399|Homo sapiens PTPsigma [AA 524- 1926]...    32   0.96 
U31501-1|AAC50292.1|  673|Homo sapiens fragile X mental retardat...    29   9.0  
BT009817-1|AAP88819.1|  673|Homo sapiens fragile X mental retard...    29   9.0  
BC067272-1|AAH67272.1|  673|Homo sapiens fragile X mental retard...    29   9.0  
BC051907-1|AAH51907.1|  673|Homo sapiens fragile X mental retard...    29   9.0  
BC020090-1|AAH20090.1|  673|Homo sapiens fragile X mental retard...    29   9.0  

>U40317-1|AAC50567.1| 1911|Homo sapiens PTPsigma protein.
          Length = 1911

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 351 KFVRLRSSCVTVGLAPAPPEHRSLTLLIYSLSYGPXGN 464
           K V +RS+ + V   P PPE  +  L+ YS+ Y P G+
Sbjct: 614 KCVSVRSTAILVSWRPPPPETHNGALVGYSVRYRPLGS 651


>U35234-1|AAC50299.1| 1948|Homo sapiens protein tyrosine phosphatase
           sigma protein.
          Length = 1948

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 351 KFVRLRSSCVTVGLAPAPPEHRSLTLLIYSLSYGPXGN 464
           K V +RS+ + V   P PPE  +  L+ YS+ Y P G+
Sbjct: 626 KCVSVRSTAILVSWRPPPPETHNGALVGYSVRYRPLGS 663


>AC005788-1|AAC62834.1| 1399|Homo sapiens PTPsigma [AA 524- 1926]
           protein.
          Length = 1399

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 351 KFVRLRSSCVTVGLAPAPPEHRSLTLLIYSLSYGPXGN 464
           K V +RS+ + V   P PPE  +  L+ YS+ Y P G+
Sbjct: 103 KCVSVRSTAILVSWRPPPPETHNGALVGYSVRYRPLGS 140


>U31501-1|AAC50292.1|  673|Homo sapiens fragile X mental retardation
           syndrome related protein protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 156 IXSLGPGINENVPAGKARPERRTERRFXYSKGNET 52
           + S GP + EN    ++RP+RR   R   ++GN T
Sbjct: 564 LESDGPNMTENGLEDESRPQRRNRSRRRRNRGNRT 598


>BT009817-1|AAP88819.1|  673|Homo sapiens fragile X mental
           retardation, autosomal homolog 2 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 156 IXSLGPGINENVPAGKARPERRTERRFXYSKGNET 52
           + S GP + EN    ++RP+RR   R   ++GN T
Sbjct: 564 LESDGPNMTENGLEDESRPQRRNRSRRRRNRGNRT 598


>BC067272-1|AAH67272.1|  673|Homo sapiens fragile X mental
           retardation, autosomal homolog 2 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 156 IXSLGPGINENVPAGKARPERRTERRFXYSKGNET 52
           + S GP + EN    ++RP+RR   R   ++GN T
Sbjct: 564 LESDGPNMTENGLEDESRPQRRNRSRRRRNRGNRT 598


>BC051907-1|AAH51907.1|  673|Homo sapiens fragile X mental
           retardation, autosomal homolog 2 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 156 IXSLGPGINENVPAGKARPERRTERRFXYSKGNET 52
           + S GP + EN    ++RP+RR   R   ++GN T
Sbjct: 564 LESDGPNMTENGLEDESRPQRRNRSRRRRNRGNRT 598


>BC020090-1|AAH20090.1|  673|Homo sapiens fragile X mental
           retardation, autosomal homolog 2 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 156 IXSLGPGINENVPAGKARPERRTERRFXYSKGNET 52
           + S GP + EN    ++RP+RR   R   ++GN T
Sbjct: 564 LESDGPNMTENGLEDESRPQRRNRSRRRRNRGNRT 598


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,333,974
Number of Sequences: 237096
Number of extensions: 940140
Number of successful extensions: 1904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)