Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30347
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    27   0.082
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    27   0.082
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 23  ARLDAXXAGSVSFPLEYXNRRSVLRSGRA 109
           A++    AG VS+P +   RR +++SGRA
Sbjct: 219 AQVVTTVAGIVSYPFDTVRRRMMMQSGRA 247


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 23  ARLDAXXAGSVSFPLEYXNRRSVLRSGRA 109
           A++    AG VS+P +   RR +++SGRA
Sbjct: 219 AQVVTTVAGIVSYPFDTVRRRMMMQSGRA 247


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 147 LGPGINENVPAGKARPERRTE 85
           L PG++   P G  RP+ R E
Sbjct: 466 LQPGMSFGEPLGLRRPQEREE 486


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 59  FPLEYXNRRSVLRSGRAFPAGTF 127
           F ++  NR+ +L+ G     GTF
Sbjct: 50  FNIDTPNRQKILKDGFPIKCGTF 72


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 389 PRSGPPGAP 415
           P  GPPGAP
Sbjct: 47  PPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,476
Number of Sequences: 438
Number of extensions: 2050
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)