Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30346
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.33 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   0.75 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   2.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   2.3  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.0  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 221 KLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSL 87
           ++  VTN  S    P T+S+ +  FD++  + ++ DSF+ + + L
Sbjct: 559 EVETVTNDPSFSQQPGTHSRILRNFDAISSIDSIPDSFSDSAVDL 603


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 254 PAADGEGPTVQIREPGSSTFRPQEXTXWFFGGHPQTPRDQVV*AR*TEH 400
           PAA    P +Q ++   + + PQ+        +PQ P+  +V A+ TEH
Sbjct: 217 PAASSSAPPMQYQQ---TAYPPQQAPYPPVQAYPQAPQQPIVVAQPTEH 262


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 370 PSGLSTMNRTYYALFWNQDSSSKCEL 447
           PSG S + +T YAL W   S +K  +
Sbjct: 530 PSGTSFVVKTLYALSWAHSSKTKLNI 555


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 20/68 (29%), Positives = 27/68 (39%)
 Frame = +1

Query: 61  CCXLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQXIKPP 240
           C  +YV+   EST    E  RL +I   SN++   E +T  G    R            P
Sbjct: 96  CEAIYVLQNFESTDFNKEKERLVSIILESNNKSNNELITKNGYGNTRLDLLNQLSEYISP 155

Query: 241 EKTLARSR 264
           E  L + R
Sbjct: 156 EILLPKRR 163


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 304 KHFSPPRXHXLVLRWPSTNSARPSGLSTMNRTYYALFWNQDSSSK 438
           KH  P     L   W    S   + L++ + T++ L  NQ+ +S+
Sbjct: 430 KHLVPENKSKLQYVWQKKESLPYANLTSASNTHFFLSENQNDTSE 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,643
Number of Sequences: 5004
Number of extensions: 34866
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)