Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30346
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0887 + 6803937-6804030,6804101-6804204                           29   1.3  
04_03_0368 + 15004949-15005659,15005789-15005848                       28   3.0  
03_06_0518 - 34474776-34474865,34475168-34475437,34475536-344758...    28   3.0  
12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593     27   5.2  
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602...    27   6.9  
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944...    27   9.1  
01_01_1053 - 8305111-8305476                                           27   9.1  

>06_01_0887 + 6803937-6804030,6804101-6804204
          Length = 65

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 244 KTLARSRR*RAYCPDSGARLKHFSPPRXH 330
           K LA S R + +C   GAR+  FSPPR H
Sbjct: 33  KELASSLRNKKFC--KGARVHTFSPPRHH 59


>04_03_0368 + 15004949-15005659,15005789-15005848
          Length = 256

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 345 PKNQXVXSWGRKVLEPGSRIWTVGP 271
           P+ + + + GR++  PGSRIW   P
Sbjct: 144 PRRRRLLTAGRQIWPPGSRIWPPAP 168


>03_06_0518 -
           34474776-34474865,34475168-34475437,34475536-34475831,
           34475924-34476013,34476172-34476337,34476399-34476679,
           34476881-34477217
          Length = 509

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 240 RKDPSPQPTVKGLLSRF-GSQAQALFAPKKXRFGSSVA-IHKLRE 368
           R+D  P+PT K  L RF G +      P+  R  +SVA + K+ E
Sbjct: 379 RRDLDPRPTTKWALQRFRGGEVVVAMDPRIRRSPASVATVEKVME 423


>12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593
          Length = 129

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 114 VAKIKNNF*TIEFENCF*IRHRSG 185
           +A+I+NNF  +  ENC  I H+SG
Sbjct: 75  LAEIRNNFDILSRENCRGIGHQSG 98


>09_04_0480 +
           17958726-17958926,17959294-17959382,17960176-17960242,
           17960329-17960444,17960978-17961044,17961158-17961206,
           17961630-17961715,17961825-17962078,17962158-17962213,
           17962683-17962768,17963047-17963139,17963790-17964219,
           17964338-17964861,17964962-17965190,17965271-17965566
          Length = 880

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 287 IREPGSSTFRPQEXTXWFFGGHPQTPR 367
           +R PG ST++ ++   W FG H   PR
Sbjct: 379 VRRPGLSTWKVRDRGSW-FGTHEDVPR 404


>02_02_0363 +
           9446055-9446524,9446658-9446771,9446856-9447281,
           9447812-9447893,9447964-9448020,9448633-9448881,
           9448978-9449109,9449163-9449291
          Length = 552

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 174 HRSGFNGSEVRNLPEFPAXQAARKDPSPQPTVKGLLSRFGSQAQA 308
           HR+   G+    LP   A  AA   P P P    ++   G  A+A
Sbjct: 237 HRNSLAGTTRNKLPSSSAASAASAQPQPPPPSVVVVGAGGGGAEA 281


>01_01_1053 - 8305111-8305476
          Length = 121

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 195 SEVRNLPEFPAXQAARKDPSPQPTVKGLLSRFGSQAQA 308
           +E RN+    A  A  KD   QPT      RFGS   A
Sbjct: 22  AEARNIKAAAAAAAESKDTVVQPTTFPPFDRFGSAVPA 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,392,321
Number of Sequences: 37544
Number of extensions: 258610
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)