Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30346
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)               27   9.3  
SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)                   27   9.3  

>SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -2

Query: 251 RVFSGGLXCWKLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSLLQ 81
           ++ +G +  W           +   ++  KTIL FDS E+ L L       V+  LQ
Sbjct: 238 KLMAGQIDLWATGDPAGRYLAKQDGISGLKTILRFDSAELYLALNKEVPDEVVQKLQ 294


>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
          Length = 861

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 310 FSPPRXHXLVLRWPSTNSARP 372
           FSPPR H  + R+ S NS  P
Sbjct: 169 FSPPRNHGSLSRYTSKNSLSP 189


>SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)
          Length = 327

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 245 RP*PAADGEGPTVQIREPGSSTFRPQEXTXWFFGGHPQTPRDQV 376
           RP P A  +G  + +  PGS   +PQ       GG+P  P+ Q+
Sbjct: 267 RPPPVAVQQGQPLVVPPPGSYPTQPQTGYP-AQGGYPMQPQGQM 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,998,216
Number of Sequences: 59808
Number of extensions: 285869
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)