Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30346
         (447 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK090428-1|BAC03409.1|  339|Homo sapiens FLJ00345 protein protein.     31   1.4  
X72631-1|CAB53540.1|  614|Homo sapiens Rev-ErbAalpha protein pro...    31   1.8  
M24898-1|AAA52335.1|  614|Homo sapiens triiodothyronine receptor...    31   1.8  
BC056148-1|AAH56148.1|  614|Homo sapiens nuclear receptor subfam...    31   1.8  
BC047875-1|AAH47875.1|  614|Homo sapiens nuclear receptor subfam...    31   1.8  
AL118506-14|CAI21905.1|  106|Homo sapiens sterile alpha motif do...    29   5.5  
AK125190-1|BAC86077.1|  188|Homo sapiens protein ( Homo sapiens ...    29   7.2  
AK128169-1|BAC87306.1|  640|Homo sapiens in, 230kDa subunit) (TN...    29   9.5  

>AK090428-1|BAC03409.1|  339|Homo sapiens FLJ00345 protein protein.
          Length = 339

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 292 GARLKHFSPPRXHXLVLRWPST--NSARPSGLSTMNRTYYALFWNQDSS 432
           G  L H  PP    L+L WP T    +  SG   + R+ Y L W++ S+
Sbjct: 9   GCSLPHLPPPPACALLLPWPRTWVFPSPASGWRWLTRSRYPLTWSRTST 57


>X72631-1|CAB53540.1|  614|Homo sapiens Rev-ErbAalpha protein
           protein.
          Length = 614

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 216 EFPAXQAARKDPSPQPTVKGLLSRFGSQAQALFAPKKXRFGSS 344
           +FP      + PSP+PTV+ ++S+     + +F     + GSS
Sbjct: 268 QFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>M24898-1|AAA52335.1|  614|Homo sapiens triiodothyronine receptor
           protein.
          Length = 614

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 216 EFPAXQAARKDPSPQPTVKGLLSRFGSQAQALFAPKKXRFGSS 344
           +FP      + PSP+PTV+ ++S+     + +F     + GSS
Sbjct: 268 QFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>BC056148-1|AAH56148.1|  614|Homo sapiens nuclear receptor subfamily
           1, group D, member 1 protein.
          Length = 614

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 216 EFPAXQAARKDPSPQPTVKGLLSRFGSQAQALFAPKKXRFGSS 344
           +FP      + PSP+PTV+ ++S+     + +F     + GSS
Sbjct: 268 QFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>BC047875-1|AAH47875.1|  614|Homo sapiens nuclear receptor subfamily
           1, group D, member 1 protein.
          Length = 614

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 216 EFPAXQAARKDPSPQPTVKGLLSRFGSQAQALFAPKKXRFGSS 344
           +FP      + PSP+PTV+ ++S+     + +F     + GSS
Sbjct: 268 QFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>AL118506-14|CAI21905.1|  106|Homo sapiens sterile alpha motif
           domain containing 10 protein.
          Length = 106

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 427 NPDSRTAHNMFCSSCLNHLVS 365
           +PDS TAH  FC + L H VS
Sbjct: 66  SPDSATAHFSFCRTLLEHTVS 86


>AK125190-1|BAC86077.1|  188|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43200 fis, clone FEBRA2007793. ).
          Length = 188

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 375 TWSRGVCGWPPKNQXVXSWGRKVLEPGSRIWTVGP 271
           TW  G C WP  N+ +  W R+ L     +W   P
Sbjct: 80  TWPGGQCPWPLANRTL--WNRRNLGSCPALWPASP 112


>AK128169-1|BAC87306.1|  640|Homo sapiens in, 230kDa subunit)
           (TNRC11).  protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 73  YVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVT 210
           YV+  S STF A + +R  T++ ++      E VTG G  +AR  T
Sbjct: 112 YVLNASNSTFEACDPQRTGTVA-VAQVLAYLEAVTGQGPQDARLQT 156


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,585,762
Number of Sequences: 237096
Number of extensions: 1416734
Number of successful extensions: 2531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2531
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)