Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30346
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81109-11|CAB03254.2|  318|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z81109-11|CAB03254.2|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.11 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 160 VFEFVTGVGSMEARFVTCR-SFQXIKPPEKTLARSRR*RAY 279
           +  F TGVG + A   T +     I PP   LARS R +A+
Sbjct: 92  IIGFGTGVGMLSACIQTIQYRHSKIVPPNSILARSSRIKAF 132


>Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical
           protein K07G5.1 protein.
          Length = 998

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
 Frame = +1

Query: 124 LRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQXIKPPEKTLARSRR*RAYCPDSGARL 303
           ++ I  +S   +V     GV   +   + C     +    + L+  +    Y PD G  L
Sbjct: 79  IKAIHVISEEELVIHLDDGVHKKKIN-IKCSIHPAVHLARQLLSAVKH---YFPDFGVYL 134

Query: 304 KHFSPPRXHXLVLRWPSTNSARPSGLSTMNRTYYAL--FWNQ 423
           +         L   +PS  +A P    +  RTY AL  F++Q
Sbjct: 135 QSSIDVNPSALYTEFPSLPTASPRPCHSFRRTYAALCDFYDQ 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,224
Number of Sequences: 27780
Number of extensions: 207707
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)