Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30346
         (447 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42430.1 68414.m04893 expressed protein                             33   0.067
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    29   1.1  
At1g21500.1 68414.m02689 expressed protein                             29   1.9  
At4g28620.1 68417.m04092 ABC transporter family protein identica...    27   4.4  
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    27   4.4  
At5g04060.1 68418.m00387 dehydration-responsive protein-related ...    27   5.8  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   7.6  
At1g06630.1 68414.m00700 F-box family protein contains F-box dom...    27   7.6  

>At1g42430.1 68414.m04893 expressed protein
          Length = 435

 Score = 33.5 bits (73), Expect = 0.067
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 294 SQAQALFAPKKXRFGSSVAIHKLRETKWFKHDE 392
           S A +L   K  RFG   + H+LR TKWFK D+
Sbjct: 7   SSAISLLDIKLRRFGVGASNHELRLTKWFKGDQ 39


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  HLPRTSRED*EQFLNYRIRELFLN-SSQEWVQWKRGS 205
           +L    RE  E  L  R R+L+ N SS EW+ W+ G+
Sbjct: 154 YLDHVLREGKEIGLKKRERKLYTNNSSHEWISWRLGT 190


>At1g21500.1 68414.m02689 expressed protein
          Length = 126

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +3

Query: 225 AXQAARKDPSPQPTVKGLLSRFGSQAQALFAPKKXRFGSSVAIHKLRE 368
           A  AAR+ P P P  K   +  G QA+ L A KK +     +I KLRE
Sbjct: 64  AMAAARRPPPPPPKEKKDPTVTGVQAKVL-ASKKRKEEMKASIAKLRE 110


>At4g28620.1 68417.m04092 ABC transporter family protein identical
           to half-molecule ABC transporter ATM2 GI:9964119 from
           [Arabidopsis thaliana]
          Length = 680

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +3

Query: 174 HRSGFNGSEVRNLPEFPAXQAARKDPSP-QPTVKGLLSRFGSQAQALFAPKKXRFGSSVA 350
           H S F   +  ++ E P   A+ + PSP  P V   +  F +   A    K  R  S   
Sbjct: 29  HHSFFKLIKRNSILESPPTNASHQSPSPITPMVNARVMFFSTSTSAPHPEKINRTSSENI 88

Query: 351 IHKLRETKWFKHDEQNILCAVLESGF 428
           +  +    W K + +  LC  + S F
Sbjct: 89  LRMISSYLWMKDNPK--LCFRVISAF 112


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 89  VRVHLPRTSRED*EQFLNYRIRELFLN-SSQEWVQWKRG 202
           +  +L    RE     L  R R+L+ N SSQEW  W+ G
Sbjct: 157 IETYLDHVLREGKAIGLMNRERKLYTNNSSQEWYPWRSG 195


>At5g04060.1 68418.m00387 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 202 FVTCRSFQXIKP--PEKTLARSRR*RAYCPDSGARLKHF-SPPRXHXLVLRWPST 357
           ++ C +   ++   P   L+R      +CP    RL     PP+ + + +RWP++
Sbjct: 93  YIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKDYKIPIRWPTS 147


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 317  PQEXTXWFFGGHPQTPRDQVV*AR*TEHIMRCSGI 421
            P++   W +GGHP  P    +  +  E +  CS +
Sbjct: 2766 PEKSMLWAYGGHPSLPVSAELFHKQQEFLQLCSTV 2800


>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 115 SRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQXI 231
           S++ RT+ KL ++    + V+G+G  EA +V   SF+ +
Sbjct: 41  SKKWRTLFKLVDTLEFDDSVSGMGEQEASYVFPESFKDL 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,774,633
Number of Sequences: 28952
Number of extensions: 197116
Number of successful extensions: 478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)