Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30342
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    30   0.26 
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   3.2  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   4.2  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    25   7.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.8  

>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +1

Query: 274  YGPGSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTRTVCNTYRTRHETENGN 453
            Y PGS MP A  Y +Q T S  +    G    +++S     P +++ ++        +G 
Sbjct: 1068 YTPGSDMPSAKLYDQQLTLSPSLMTNQG----SNFSSTDSTPRKSINSSDVESRSKTDGP 1123

Query: 454  KDWPELYSAAHARQ 495
            K   +L    H R+
Sbjct: 1124 KSMHDLIKQLHMRK 1137


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 59  FGSI*NSWSIAAYFPSATTTKANFYGTAWRLRAFTAYRSW 178
           FG+  N+W         TT KA+F    WRL+       W
Sbjct: 418 FGAADNNWLNNVVDSILTTLKADFPSLLWRLQPSAKNLEW 457


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 165 HTVPGRSSWGGLNVAYEMQQDPNKPGVSGM 254
           H++PG  SWGG+ V  + +  P    ++G+
Sbjct: 819 HSLPGWGSWGGVGVK-QRKTKPKVKKIAGL 847


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +1

Query: 364 SYASWSFRSPVPTRTVCNTYRTRHETENGNKDWPELYSAAHARQRIESESGAAXR 528
           ++A   + S    RTV N  R  HE      +         +R+R E  S AA +
Sbjct: 198 NFAYKEYESEERRRTVLNIRRAEHEARLAELNSASTNEEGSSRRRKEQSSSAAAK 252


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 100 SISHNHKSQLLWNSLASQGIHRIPFLVALLGVV 198
           S++HN  S +LWN   + G  R+  +V  + VV
Sbjct: 718 SLAHNQLSSVLWNMTLANGF-RMTGIVGSIFVV 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,287
Number of Sequences: 5004
Number of extensions: 48841
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)