Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30342
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 29 1.9
06_03_0981 + 26527005-26527260,26527457-26527770 29 2.5
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706... 28 4.3
10_08_1037 - 22477358-22478752 28 4.3
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 28 4.3
10_07_0028 + 12019827-12020000,12020083-12020505,12020583-120206... 28 5.7
03_01_0236 + 1851336-1851683 28 5.7
06_03_1412 + 29993566-29993873,29993960-29994583,29994665-299948... 27 7.5
01_06_0504 + 29867795-29868138,29868994-29869294,29869391-298700... 27 7.5
05_04_0099 - 17991569-17993014 27 10.0
03_05_0214 + 22040356-22040886 27 10.0
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 84 PSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQ 224
P +HQP P + P V H V G S+ A++MQQ
Sbjct: 439 PQMQAYHQPPPMSHAQPQNPSV-----HAVTGHQSFSQPQPAHQMQQ 480
>06_03_0981 + 26527005-26527260,26527457-26527770
Length = 189
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 515 PLSDSIRCRACAALYNSGQSLFPFSVSWRVLY 420
P+ R RAC Y G++L P S WR Y
Sbjct: 69 PVPSPPRQRACLCRYGRGENLVPASDEWRRRY 100
>12_02_0738 +
22669557-22669756,22669868-22669916,22670620-22670657,
22670977-22671058,22671146-22671195,22671381-22671847,
22671992-22672155,22672242-22672448,22672554-22672710,
22672858-22672965,22673161-22673234,22673364-22673521,
22673728-22673788,22673858-22673965
Length = 640
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 108 PQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNV 206
P+P PTS G S S H +P + + G N+
Sbjct: 447 PEPISPTSAAAAGPSNRSDHQMPNQGTIGAENL 479
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 72 EIPGPSQH-IFHQPQPQKPTSMEQPG 146
+IP P+ + FH+P P +P M PG
Sbjct: 291 QIPNPNHNPAFHRPPPPQPMPMPMPG 316
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Frame = +1
Query: 274 YGPGSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTRTVCNTY----RTRHET 441
YG G P AGY + + ++G G G + R PTR+ + R+ +
Sbjct: 131 YG-GYQPPPTAGYGDDDYLNEGAYAYSGDGGSEPYGARGTAPTRSGAAMFDDYGRSIGPS 189
Query: 442 ENGNKDWP 465
G WP
Sbjct: 190 SGGADQWP 197
>10_07_0028 +
12019827-12020000,12020083-12020505,12020583-12020642,
12020709-12020822,12020903-12020908
Length = 258
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 90 QHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAY 212
QHIFHQP T + P V + + P R S G ++ Y
Sbjct: 37 QHIFHQPASMYMTDL-FPDVVPQTTESSPHRKSNSGRDIEY 76
>03_01_0236 + 1851336-1851683
Length = 115
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 111 QPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVS 248
QPQ + P +S P T R ++GG A E ++DP +P S
Sbjct: 36 QPQLQREHQPPNISEMKPLT---REAYGGGMYANEGRRDPTRPRAS 78
>06_03_1412 +
29993566-29993873,29993960-29994583,29994665-29994800,
29995108-29995196,29995299-29995413,29995565-29995628,
29995711-29995782,29995906-29996153
Length = 551
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 78 PGPSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSS 188
PGP+ H+F QPQ + P + G +P VP SS
Sbjct: 490 PGPTTHVFPQPQESDSPAGRTP-IPGAAP--VPRSSS 523
>01_06_0504 +
29867795-29868138,29868994-29869294,29869391-29870078,
29870192-29870421
Length = 520
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 190 QEERPGTVCGECPETPGCSIEVGFC 116
++ RPG C C P CS+ + C
Sbjct: 85 EDGRPGCECNSCFSGPDCSVRIPNC 109
>05_04_0099 - 17991569-17993014
Length = 481
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 193 PQEERPGTVCGECPETPGCS 134
P ++ G +CG PET GC+
Sbjct: 142 PCDDDDGALCGVAPETAGCA 161
>03_05_0214 + 22040356-22040886
Length = 176
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 412 RRSWWARGTGR 380
RR WW RGTGR
Sbjct: 48 RRRWWQRGTGR 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,956,776
Number of Sequences: 37544
Number of extensions: 399583
Number of successful extensions: 1201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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