Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30342
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  35   0.051
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)         30   1.1  
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)                 30   1.1  
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.8  
SB_41790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 75   IPGPSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKP 239
            IP    HI  QPQP+ PT +E  G+   SP   P         +  E+Q+ P  P
Sbjct: 1212 IPPGVDHIAVQPQPRPPTPIEVDGIDSPSPPPPPPEEDDISEELVDEVQEFPVSP 1266


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 379  SFRSPVPTRTVCNT-YRTRHETENGNKDWPELYSAAHARQRIESESGAAXR 528
            + R+ V T+T C   YR+  +       WP   SAA A   I++E GA  R
Sbjct: 1178 AMRATVATKTKCGARYRSHQDRVRRALPWPPRQSAARATVAIKTECGARYR 1228


>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 114  PQKPTSMEQPGVSGHSPHTVPGRSSWGGLN-VAYEMQQDPNKPGVSGMPVLVKTIWARFP 290
            PQ P S  QP +S    + + G      ++ + +E+  DP+   V+G P L   + +   
Sbjct: 825  PQAPVSPSQPVISSSEMY-IQGSPKQETIDAITFEIPMDPSASVVNGTPDLPSGVLSPPV 883

Query: 291  YARCRRLSG 317
            Y +  RL+G
Sbjct: 884  YGKTFRLNG 892


>SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)
          Length = 550

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 GSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTR 405
           G +  D A   E   + +G+ C+ G      WS RSPV  R
Sbjct: 57  GRYNIDIAALSETRLAGEGMLCERGTDYTFFWSGRSPVERR 97


>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
          Length = 1092

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 GSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTR 405
           G +  D A   E   + +G+ C+ G      WS RSPV  R
Sbjct: 63  GRYNIDIAALSETRLAGEGMLCERGTDYTFFWSGRSPVERR 103


>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1395

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 GSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTR 405
           G +  D A   E   + +G+ C+ G      WS RSPV  R
Sbjct: 103 GRYNIDIAALSETRLAGEGMLCERGTDYTFFWSGRSPVERR 143


>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 105 QPQPQKPTSMEQPGVSGHSPHTVPGRSS 188
           +P+P KPT +  PG++ H  +T P  +S
Sbjct: 474 KPKPAKPTLLPLPGINSHQDNTSPPPTS 501


>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 GSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTR 405
           G +  D A   E   + +G+ C+ G      WS RSPV  R
Sbjct: 79  GRYNIDIAALSETRLAGEGMLCERGTDYTFFWSGRSPVERR 119


>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 GSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTR 405
           G +  D A   E   + +G+ C+ G      WS RSPV  R
Sbjct: 57  GRYNIDIAALSETRLAGEGMLCERGTDYTFFWSGRSPVERR 97


>SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 415 NTYRTRHETENGNKDWPELYSAAHARQRIESESGAAXRLSR 537
           NT++   E EN N  WP   S A + + ++S+ G   +  R
Sbjct: 204 NTHQEEEEGENSNSSWPSFSSYATSWE-VDSDDGEGIQEKR 243


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +1

Query: 475 SAAHARQRIESESGAAXRLSRA 540
           S AHAR + ESESG   R SRA
Sbjct: 891 SKAHARPQAESESGNTDRNSRA 912


>SB_41790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 114 PQKPTSMEQPGVSGHSPHTVP 176
           P +   + QPGV GH  H VP
Sbjct: 17  PDRQARLVQPGVEGHQVHPVP 37


>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +3

Query: 78  PGPSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
           PGP  H+     P  P +   PG  G +P  +PG     GL  A      P  PG+ G
Sbjct: 105 PGPPGHVGEDGAPGAPGAPGPPGSPG-AP-GLPGEKGDPGLQGAPGAAGLPGAPGLPG 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,440
Number of Sequences: 59808
Number of extensions: 428289
Number of successful extensions: 1309
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)