Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30342
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical pr... 35 0.034
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 31 0.55
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 31 0.55
Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 1.7
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 1.7
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical ... 29 2.2
AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical ... 29 2.2
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 2.2
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 29 2.2
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 5.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF036706-14|AAK39276.2| 390|Caenorhabditis elegans Kinase, glh-... 28 5.1
Z99273-2|CAB16475.1| 117|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z83216-10|CAB62779.1| 117|Caenorhabditis elegans Hypothetical p... 27 6.8
Z82261-3|CAB05146.1| 67|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical pr... 27 6.8
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 27 6.8
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 9.0
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 9.0
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 9.0
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 9.0
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 9.0
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 27 9.0
>U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical
protein F47D12.7 protein.
Length = 579
Score = 35.1 bits (77), Expect = 0.034
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 295 PDAAGYQEQETSS--DGVCCQHGAGSYASWSFRSPVPTRTVCNTYRTRHETENGNKDWPE 468
PDA Y+ T D + C + W+ R VCNT R +T N N D P
Sbjct: 250 PDATKYEVIRTRQPMDAIVC------FGGWASRGVAQKIEVCNTRSDRWQTCNFNYDIPN 303
Query: 469 LYSAAHARQRIESE 510
++ A H + +E +
Sbjct: 304 IHRAYHGIEVVEDK 317
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 78 PGPSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKP 239
P P+Q P P + T + +P G + T P W Y QQ+PN P
Sbjct: 264 PPPAQQA---PIPTEKTQIPRPPSHGSAWPTFPPHQQWTPQGYPYGYQQNPNSP 314
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 78 PGPSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKP 239
P P+Q P P + T + +P G + T P W Y QQ+PN P
Sbjct: 286 PPPAQQA---PIPTEKTQIPRPPSHGSAWPTFPPHQQWTPQGYPYGYQQNPNSP 336
>Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical
protein F39H11.3 protein.
Length = 588
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Frame = +3
Query: 81 GPSQHIFHQPQPQKPTSMEQPGVSGHSPH-------TVPGRSSWGGLNVAYEMQQDPNKP 239
G Q Q P M+QPG SG+ P VPG G +N MQ P
Sbjct: 490 GAPQDYHPQQGPPMVQMMQQPGPSGYYPQRPGQPTGAVPGPGPQGYMNPQMGMQMGMRAP 549
Query: 240 GV 245
GV
Sbjct: 550 GV 551
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 259 TGIPLTPGLFGSCCIS*ATFRPPQEERPGTVCGECPE-TPGCSIEVGFCG 113
TG+P PG+ G + P G CG CP+ PG + + GF G
Sbjct: 506 TGLPGEPGMPGRIGVDGYPGPPGNNGERGEDCGYCPDGVPGNAGDPGFPG 555
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 259 TGIPLTPGLFGSCCIS*ATFRPPQEERPGTVCGECPE-TPGCSIEVGFCG 113
TG+P PG+ G + P G CG CP+ PG + + GF G
Sbjct: 505 TGLPGEPGMPGRIGVDGYPGPPGNNGERGEDCGYCPDGVPGNAGDPGFPG 554
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 518 APLSDSIRCRACAALYNSGQSLFPFSVSWRV 426
+PL C AC +SGQ L +SW V
Sbjct: 123 SPLGSPTTCAACDQALHSGQVLLALGLSWHV 153
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 518 APLSDSIRCRACAALYNSGQSLFPFSVSWRV 426
+PL C AC +SGQ L +SW V
Sbjct: 109 SPLGSPTTCAACDQALHSGQVLLALGLSWHV 139
>AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.3 protein.
Length = 271
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 370 ASWSFRSPVPTRTVCNTYRTRHETENGNKDWPELY 474
A+ F P TV YR RH TE +WP +Y
Sbjct: 218 ANLMFGPPRRRTTVAAWYRQRHATELTRPEWPLVY 252
>AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.2 protein.
Length = 271
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 370 ASWSFRSPVPTRTVCNTYRTRHETENGNKDWPELY 474
A+ F P TV YR RH TE +WP +Y
Sbjct: 218 ANLMFGPPRRRTTVAAWYRQRHATELTRPEWPLVY 252
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P +P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1063 GPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEP----SDPNKPGPNG 1116
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P +P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1091 GPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEP----SDPNKPGPNG 1144
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P +P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1203 GPSDPNKPGPNGPNEPSDPNKPGPNGSNGPSDPNKPGPNGPNGP----SDPNKPGPNG 1256
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P +P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1119 GPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNGP----SDPNKPGPNG 1172
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1147 GPSDPNKPGPNGPNGPSDPNKPGPNGPNESSDPNKPGPNGPNEP----SDPNKPGPNG 1200
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P +P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1187 PNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEP----SDPNKPGPNG 1228
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P P+ +PG +G + + P R G N DPNKPG +G
Sbjct: 1231 GPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNRPGPNGPNGPL----DPNKPGPNG 1284
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P +P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1301 GPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNGP----SDPNKPGPNG 1354
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P P+ +PG +G + + P + G N + DPNKPG +G
Sbjct: 1145 PNGPSDPNKPGPNGPNGPSDPNKPGPNGPNES----SDPNKPGPNG 1186
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +3
Query: 78 PGPSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P P+ + P P P P G + P + G N E DPNKPG +G
Sbjct: 1032 PTPNWPSPNGPSPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNE-PSDPNKPGPNG 1088
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1049 GPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGP----SDPNKPGPNG 1102
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1201 PNGPSDPNKPGPNGPNEPSDPNKPGPNGSNGP----SDPNKPGPNG 1242
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P +P+ +PG +G + P + G N DPNKPG +G
Sbjct: 1245 GPSDPNKPGPNGPNEPSDPNRPGPNGPNGPLDPNKPGPNGPNGP----SDPNKPGPNG 1298
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 GPSQHIFHQPQ-PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
GPS P P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1287 GPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGP----SDPNKPGPNG 1340
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1089 PNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGP----SDPNKPGPNG 1130
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1117 PNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGP----SDPNKPGPNG 1158
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1285 PNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEP----SDPNKPGPNG 1326
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQQDPNKPGVSG 251
P P+ +PG +G + + P + G N DPNKPG +G
Sbjct: 1327 PNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEP----SDPNKPGPNG 1368
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 518 APLSDSIRCRACAALYNSGQSLFPFSVSWRV 426
+PL C AC +SGQ L +SW V
Sbjct: 123 SPLGSPTTCAACDQALHSGQVLLALGLSWHV 153
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 319 QETSSDGVCCQHGAGSYASWSFRSPVPTRTVCNTYRTRHETEN 447
++ SSD VC +G AS P+ R +C R+ +EN
Sbjct: 83 RKNSSDSVCSSKKSGKQASVDQVPPLLQRALCTKSRSPKNSEN 125
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 78 PG-PSQHIFHQPQ--PQKPTSMEQPGVSGHSPHTVPGRSSWGG 197
PG P Q H P P KP S PG GHS PG+ G
Sbjct: 181 PGQPGQPGPHGPNGHPGKPGSQGPPGPPGHSDEPKPGQPGQPG 223
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 78 PGPSQHIFHQPQPQKPTSMEQPGVSGHSPHTVPGR 182
P P QH HQP P P ++ P + + VPG+
Sbjct: 72 PYPYQHP-HQPPPAHPHHLQHPHPYAYPGYPVPGQ 105
>AF036706-14|AAK39276.2| 390|Caenorhabditis elegans Kinase,
glh-binding protein 1 protein.
Length = 390
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 25 YRLYDRLHSLRFRFN-LKFLVHRSIFSISHNHKSQLLWNSLASQGI 159
+ L++ +H LR L F V++S+ +I H H S ++ L I
Sbjct: 125 HNLHEVIHRLRLDHKTLSFFVYQSLCAIKHLHNSGVIHRDLKPSNI 170
>Z99273-2|CAB16475.1| 117|Caenorhabditis elegans Hypothetical
protein Y45F10C.2 protein.
Length = 117
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 475 CTTRANLCFHFRFHGAFCTYCRRS 404
C T+A C F +G +CT C S
Sbjct: 29 CVTKAKSCTMFFLNGVYCTECTYS 52
>Z83216-10|CAB62779.1| 117|Caenorhabditis elegans Hypothetical
protein C08F11.12 protein.
Length = 117
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 475 CTTRANLCFHFRFHGAFCTYCRRS 404
C T+A C F +G +CT C S
Sbjct: 29 CVTKAKSCTMFFLNGVYCTECTYS 52
>Z82261-3|CAB05146.1| 67|Caenorhabditis elegans Hypothetical
protein C35D6.3 protein.
Length = 67
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 370 ASWSFRSPVPTRTVCNTYRTRHETENGNKDWP 465
AS F P TV N Y+ RH T +WP
Sbjct: 14 ASLEFGPPRRRTTVVNWYQERHGTRLTKPEWP 45
>Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical
protein T06E4.11 protein.
Length = 275
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 78 PGPSQHIFHQPQPQKPTSMEQPG 146
PGP Q F Q PQ P + PG
Sbjct: 136 PGPIQQQFPQQYPQGPAQQQAPG 158
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 319 QETSSDGVCCQHGAGSYASWSFRSPVPTRTVCNTYRTRHETEN 447
++ SSD VC +G AS P R +C R+ +EN
Sbjct: 83 RKNSSDSVCSSKKSGEQASVDQVPPPLQRALCTKSRSSKNSEN 125
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 PSQHI-FHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQ 221
P QH +QP P + + P H+ +PG SS LN Y++Q
Sbjct: 514 PPQHQPIYQPSTSTPLNPKMPLSIDHNDPRIPGNSSI-RLNYPYQVQ 559
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 PSQHI-FHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQ 221
P QH +QP P + + P H+ +PG SS LN Y++Q
Sbjct: 420 PPQHQPIYQPSTSTPLNPKMPLSIDHNDPRIPGNSSI-RLNYPYQVQ 465
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 PSQHI-FHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQ 221
P QH +QP P + + P H+ +PG SS LN Y++Q
Sbjct: 514 PPQHQPIYQPSTSTPLNPKMPLSIDHNDPRIPGNSSI-RLNYPYQVQ 559
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHT-VPGRSSWGGLNVAYEMQQDPNKPGVSGMP 257
P P + PG+ G++ VPG GGL + +PGV GMP
Sbjct: 937 PGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMP 985
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHT-VPGRSSWGGLNVAYEMQQDPNKPGVSGMP 257
P P + PG+ G++ VPG GGL + +PGV GMP
Sbjct: 936 PGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMP 984
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHT-VPGRSSWGGLNVAYEMQQDPNKPGVSGMP 257
P P + PG+ G++ VPG GGL + +PGV GMP
Sbjct: 936 PGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMP 984
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHT-VPGRSSWGGLNVAYEMQQDPNKPGVSGMP 257
P P + PG+ G++ VPG GGL + +PGV GMP
Sbjct: 937 PGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMP 985
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PQKPTSMEQPGVSGHSPHT-VPGRSSWGGLNVAYEMQQDPNKPGVSGMP 257
P P + PG+ G++ VPG GGL + +PGV GMP
Sbjct: 973 PGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMP 1021
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 PSQHI-FHQPQPQKPTSMEQPGVSGHSPHTVPGRSSWGGLNVAYEMQ 221
P QH +QP P + + P H+ +PG SS LN Y++Q
Sbjct: 420 PPQHQPIYQPSTSTPLNPKMPLSIDHNDPRIPGNSSI-RLNYPYQVQ 465
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,613,050
Number of Sequences: 27780
Number of extensions: 322393
Number of successful extensions: 1262
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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