Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30340
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   3.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   6.9  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   9.1  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   9.1  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   9.1  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.1  

>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 87  YLXDDIYDFDSDEEVTNKRDRYCV 158
           YL + +  FD DEE    RD Y V
Sbjct: 448 YLSEKLASFDDDEEARVSRDEYFV 471


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 299 LTQVLSSNIILNYLFDDIYFVNYILFLIVLFGYNIL 192
           ++QVL  N+   Y  DD    +Y + + +L  YN +
Sbjct: 296 MSQVLGHNLQYMYKEDDENLESYFMMVALLIKYNFI 331


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 75  ANRNYLXDDIYDFDSDEEVTNKRDRY 152
           A+  Y   D YD DSD+E T   DRY
Sbjct: 343 ASHEYGSGDTYDSDSDDE-TIAYDRY 367


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +2

Query: 209 IKLLKKECNLQNKYHRTNNLRLYYCSILESELDSGHINIIHCVYLFYILNIAILN 373
           I+LL +   ++   H  NN +  Y   L   + S      + ++ ++I+ + I+N
Sbjct: 196 IELLNQSFEVRMLTHENNNKKNSYVFRLFDRVSSSTFYFFNSLFAYFIILLRIIN 250


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 242 FVNYILFLIVLFGYNILLDI 183
           F+ Y+L  +VLFG ++LL +
Sbjct: 3   FILYVLASLVLFGLSVLLSL 22


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 329 HCVYLFYILNIAIL 370
           HCVYLFY ++  +L
Sbjct: 130 HCVYLFYCISTNVL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,864
Number of Sequences: 5004
Number of extensions: 32612
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)