Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30340
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30621| Best HMM Match : SH3_2 (HMM E-Value=0.23)                    28   5.4  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           28   5.4  
SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       27   7.2  
SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_30621| Best HMM Match : SH3_2 (HMM E-Value=0.23)
          Length = 391

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 155 CGRIKGWLQ*CLEVYYNQIKLLKKECNLQNKYHRTNNLRLYYCSIL 292
           C R +GW++ CL          +  C  +  Y RTN++++YY +I+
Sbjct: 241 CKR-RGWMKYCLH--------FRAPCKARGGYFRTNHVKVYYDTII 277


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 161 RIKGWLQ*CLEVYYNQIKLLKKECNLQNKYHRTNNLRLYYC 283
           ++  W++   E Y N ++LL+    ++  YH T      +C
Sbjct: 137 KLTPWVKFLWEAYRNVLELLRNNVRVEKLYHETAQQAFKFC 177


>SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 96  DDIYDFDSDEEVTNKRDRYCVVGSKDGYSN 185
           DD YD D D +     D Y + G  D Y N
Sbjct: 422 DDDYDNDDDYDNDGNNDDYKIDGDDDDYDN 451


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 15   GTRWPDVKYDNTATVNMGGFANRNYLXDDIY-DFDSDEE 128
            GTR  DVK ++T T    G     ++ DD +  F+S EE
Sbjct: 4931 GTRTFDVKVEDTTTSLFEGTVRPKFIEDDSFVPFESTEE 4969


>SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -2

Query: 275 IILNYLFDDIYFVNYILFLIVLFGYNILLD--ITVAIL*SYHTVSVTF 138
           II++ +   I  +  I+F+I++   +I++   IT+A + SYH +  TF
Sbjct: 198 IIISIIIIIIIIIIIIIFIIIIITTDIIIITIITIAAMPSYHFLIETF 245


>SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 206 QIKLLKKECNLQNKYHRTNNLRLYYC-SILESELDSGHINIIHCVYLFYILNIAIL 370
           ++K+L K  N+  K HR+N   +     I   E+ S H +   C+ +  I  + I+
Sbjct: 5   RVKVLGKIHNINAKVHRSNKKTIEISKQITNEEVCSDHFDNTICIIIIIITMVTII 60


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 36   KYDNTATVNMGGFANR-NYLXDDIYDFDSDEEVTNKRDRYCVVGSKDGYSNV 188
            KY++    + G + N  NY  DDI D ++D +  +    YC   + D Y  V
Sbjct: 1007 KYNDDDGTDDGNYDNDDNYNDDDIDDDNNDNDDDDYVVNYCKDDNADDYDGV 1058


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,703
Number of Sequences: 59808
Number of extensions: 232538
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)