Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30340
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    29   1.5  
U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional gl...    28   4.7  
AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacti...    28   4.7  
AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacti...    28   4.7  
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical
           protein C16C8.18 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 69  GFANRNYLXDDIYDFDSDEEVTNKRDRYC 155
           GF  + YL + I  +D D E+T+ R R+C
Sbjct: 142 GFKFKTYLDEAIAIYDQDFELTHMRGRFC 170


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 164 IKGWLQ*CLEVY--YNQIKLLKKECNLQNKYHRTNNLRLYYCSILESELDSGHI 319
           +K W++    V   +N IKL+  E N+   Y    +++ +   I  SE+ S H+
Sbjct: 106 VKHWIEHVAYVLCRHNSIKLVILEPNIDEVYEIVKDMKTFGVKIASSEIQSSHL 159


>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 227 ECNLQNKYHRTNNLRLYYCSILESELDSGHINII----HCVYLF 346
           EC+ + +YH+T N+ ++  ++++S   SG +       HC + F
Sbjct: 428 ECDGEYEYHKTKNVIVWSLAVIDSSNSSGTLEFSVPNGHCDHFF 471


>U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional
           glyoxylate cycle proteinprotein.
          Length = 1005

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 386 ICQFPKVIEAKSDHERPRLLTND 454
           +C  P +I A++D E  RLLT+D
Sbjct: 257 VCGVPTIIVARTDAESSRLLTSD 279


>AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacting
           protein protein7, isoform b protein.
          Length = 863

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 386 ICQFPKVIEAKSDHERPRLLTND 454
           +C  P +I A++D E  RLLT+D
Sbjct: 217 VCGVPTIIVARTDAESSRLLTSD 239


>AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacting
           protein protein7, isoform a protein.
          Length = 968

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 386 ICQFPKVIEAKSDHERPRLLTND 454
           +C  P +I A++D E  RLLT+D
Sbjct: 217 VCGVPTIIVARTDAESSRLLTSD 239


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 230 CNLQNKYHRTNNLRLYYCSILESELD 307
           C++   +H T NL+ ++CS+   E+D
Sbjct: 280 CHVDEFHHTTPNLQHFHCSLPHDEID 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,871
Number of Sequences: 27780
Number of extensions: 180369
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)