Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30340
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    26   0.21 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   3.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   5.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   5.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   5.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   5.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 209 IKLLKKECNLQNKYHRTNNL-RLYY 280
           I  L   CN  N Y+  NN  +LYY
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYY 328


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 215 LLKKECNLQNKYHRTNNLRLYY 280
           L  K  +  N Y+  NN +LYY
Sbjct: 307 LSNKTIHNNNNYNNYNNKKLYY 328


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 36  KYDNTATVNMGGFANRNYLXDDIYDFDSDEEV 131
           KY N    N   + N NY     Y+ +  E++
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 36  KYDNTATVNMGGFANRNYLXDDIYDFDSDEEV 131
           KY N    N   + N NY     Y+ +  E++
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 36  KYDNTATVNMGGFANRNYLXDDIYDFDSDEEV 131
           KY N    N   + N NY     Y+ +  E++
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 36  KYDNTATVNMGGFANRNYLXDDIYDFDSDEEV 131
           KY N    N   + N NY     Y+ +  E++
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,491
Number of Sequences: 438
Number of extensions: 2672
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)