Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30340
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28190.1 68418.m03413 hypothetical protein                          28   4.4  
At5g54300.1 68418.m06763 expressed protein contains similarity t...    27   5.8  
At4g01350.1 68417.m00175 DC1 domain-containing protein contains ...    27   7.7  
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica...    27   7.7  
At3g47860.1 68416.m05217 apolipoprotein D-related contains weak ...    27   7.7  

>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +3

Query: 54  TVNMGGFANRNYLXDDIYDFDSDEEVTNKR--DRYCVVGSK-DGYSNV 188
           T N GGF  ++++   IYD   D+  + KR  D    +G K DG+++V
Sbjct: 19  TENCGGFQVKDFVNKPIYDVVGDDVSSTKRTYDGDPKIGVKDDGFNDV 66


>At5g54300.1 68418.m06763 expressed protein contains similarity to
           cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 326

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +2

Query: 290 LESELDSGHINIIHCV--YLFYILNI--AILN*GV-*ICQFPKVIEAKSDHE 430
           L S++DSG++N++H V  Y  ++  I    +N  V  I +FP+V EA+   E
Sbjct: 103 LPSDIDSGYLNVVHVVSDYTGFVEKIDDVSINPTVEAIRKFPEVQEAEKSKE 154


>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 398 PKVIEAKSDHERPRLLTNDGLD 463
           P  I   S H+ P LLTND +D
Sbjct: 58  PAEISHSSHHQHPLLLTNDSID 79


>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|O14981
            TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
            sapiens}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 2049

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +3

Query: 462  IITS--IMRREVDILRIWTWNFC 524
            IITS  ++R++VD L  ++WN+C
Sbjct: 1552 IITSYDVVRKDVDYLTQFSWNYC 1574


>At3g47860.1 68416.m05217 apolipoprotein D-related contains weak
           similarity to Apolipoprotein D precursor (ApoD)
           (Swiss-Prot:P51910) [Mus musculus]
          Length = 353

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 102 IYDFDSDEEVTNKRDRYCVVGSKDGY 179
           +Y FD  E    + D +CV GS DGY
Sbjct: 167 VYTFDMKESAI-RVDTFCVHGSPDGY 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,631,937
Number of Sequences: 28952
Number of extensions: 163031
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)