Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30337
(503 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit, put... 109 3e-23
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 104 1e-21
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 103 2e-21
UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole... 96 3e-19
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 89 4e-17
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 85 6e-16
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 83 3e-15
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 76 5e-13
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 75 9e-13
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 74 2e-12
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 73 4e-12
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 73 5e-12
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 73 5e-12
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 72 6e-12
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 72 6e-12
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 71 1e-11
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 71 1e-11
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 70 3e-11
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 70 3e-11
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 70 3e-11
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 70 3e-11
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 69 8e-11
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 68 1e-10
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 67 2e-10
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 66 3e-10
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 66 6e-10
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 66 6e-10
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 65 7e-10
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 65 7e-10
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 64 1e-09
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 64 2e-09
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 64 2e-09
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 64 2e-09
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 63 3e-09
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 63 4e-09
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 63 4e-09
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 62 5e-09
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 62 5e-09
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 62 7e-09
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 62 7e-09
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 62 7e-09
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 62 7e-09
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 62 9e-09
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 62 9e-09
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 62 9e-09
UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4... 62 9e-09
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 61 2e-08
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 60 4e-08
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 59 5e-08
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 59 5e-08
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 59 6e-08
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 59 6e-08
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 59 6e-08
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 58 1e-07
UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replicatio... 57 2e-07
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 57 2e-07
UniRef50_O29072 Cluster: Replication factor C large subunit; n=1... 57 2e-07
UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1; uncu... 57 3e-07
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 56 3e-07
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 56 3e-07
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 56 3e-07
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 56 5e-07
UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2... 56 5e-07
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 55 8e-07
UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida al... 55 8e-07
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 55 8e-07
UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 54 1e-06
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 54 2e-06
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 54 2e-06
UniRef50_A2E9V5 Cluster: Differentiation specific element bindin... 53 3e-06
UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 51 1e-05
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 51 1e-05
UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4; Meth... 51 1e-05
UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6... 51 1e-05
UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1... 51 2e-05
UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1... 50 2e-05
UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1... 50 2e-05
UniRef50_P42425 Cluster: ATP-dependent protease La homolog; n=46... 50 2e-05
UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio b... 50 3e-05
UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22; A... 50 4e-05
UniRef50_Q97FT8 Cluster: Lon-like ATP-dependent protease; n=1; C... 49 7e-05
UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit... 49 7e-05
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 49 7e-05
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 48 9e-05
UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1... 48 9e-05
UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1... 48 9e-05
UniRef50_Q97CY0 Cluster: Lon-like ATP-dependent protease; n=8; C... 48 1e-04
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 48 1e-04
UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1; Caldiv... 48 1e-04
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 48 2e-04
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 48 2e-04
UniRef50_P40151 Cluster: DNA-dependent ATPase MGS1; n=6; Sacchar... 48 2e-04
UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1... 47 2e-04
UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1... 47 2e-04
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 47 3e-04
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 47 3e-04
UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1; Dict... 47 3e-04
UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1; ... 47 3e-04
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 47 3e-04
UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4... 47 3e-04
UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n... 46 4e-04
UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3; Bacter... 46 4e-04
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 46 5e-04
UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and ... 46 5e-04
UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4... 46 5e-04
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 46 6e-04
UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4... 46 6e-04
UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5... 46 6e-04
UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory ... 45 8e-04
UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RA... 45 8e-04
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 45 8e-04
UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1... 45 8e-04
UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6; Rh... 45 0.001
UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n... 45 0.001
UniRef50_Q1QXX6 Cluster: AAA ATPase, central region; n=1; Chromo... 45 0.001
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 45 0.001
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 45 0.001
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 45 0.001
UniRef50_Q8R5R3 Cluster: Uncharacterized ATPase related to the h... 44 0.001
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 44 0.001
UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and t... 44 0.001
UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau ... 44 0.001
UniRef50_Q17P00 Cluster: Werner helicase interacting protein; n=... 44 0.001
UniRef50_Q2TVY2 Cluster: Checkpoint RAD17-RFC complex; n=2; Aspe... 44 0.001
UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III, gam... 44 0.002
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 44 0.002
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 44 0.002
UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candi... 44 0.002
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 44 0.002
UniRef50_UPI0000DB7733 Cluster: PREDICTED: similar to Werner hel... 44 0.003
UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subuni... 44 0.003
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 44 0.003
UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis thali... 44 0.003
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 44 0.003
UniRef50_Q0C7D8 Cluster: Predicted protein; n=1; Aspergillus ter... 44 0.003
UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in... 44 0.003
UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5... 44 0.003
UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2; As... 44 0.003
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 43 0.003
UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21; B... 43 0.003
UniRef50_Q0SS35 Cluster: ATPase, AAA family; n=3; Clostridium|Re... 43 0.003
UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and ... 43 0.003
UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22; Epsilonproteo... 43 0.003
UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1; Methy... 43 0.003
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 43 0.003
UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2; ... 43 0.003
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 43 0.003
UniRef50_Q5AF80 Cluster: Putative uncharacterized protein RAD24;... 43 0.003
UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1... 43 0.003
UniRef50_O75943 Cluster: Cell cycle checkpoint protein RAD17; n=... 43 0.003
UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeb... 43 0.005
UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2; ... 43 0.005
UniRef50_Q59Y48 Cluster: Putative uncharacterized protein; n=1; ... 43 0.005
UniRef50_Q2U8Q6 Cluster: ATPase related to the helicase subunit ... 43 0.005
UniRef50_Q58812 Cluster: Putative protease La homolog; n=1; Meth... 43 0.005
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 42 0.006
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 42 0.006
UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1; ... 42 0.006
UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1... 42 0.006
UniRef50_UPI00015B6046 Cluster: PREDICTED: similar to werner hel... 42 0.008
UniRef50_UPI0000E4A039 Cluster: PREDICTED: hypothetical protein;... 42 0.008
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 42 0.008
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 42 0.008
UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium no... 42 0.008
UniRef50_A5DW03 Cluster: Putative uncharacterized protein; n=1; ... 42 0.008
UniRef50_UPI00015BB275 Cluster: replication factor C large subun... 42 0.010
UniRef50_Q5UQK9 Cluster: Putative uncharacterized protein; n=1; ... 42 0.010
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 42 0.010
UniRef50_Q67J53 Cluster: Lon-like ATP-dependent protease; n=14; ... 42 0.010
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 42 0.010
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 42 0.010
UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and ... 42 0.010
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 42 0.010
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 42 0.010
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 41 0.014
UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1; ... 41 0.014
UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and ... 41 0.014
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 41 0.014
UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n... 41 0.014
UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and ... 41 0.014
UniRef50_Q0UVB4 Cluster: Putative uncharacterized protein; n=1; ... 41 0.014
UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4; Thermotog... 41 0.014
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 41 0.014
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 41 0.018
UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau ... 41 0.018
UniRef50_Q8SQU0 Cluster: HSP 101 RELATED PROTEIN; n=1; Encephali... 41 0.018
UniRef50_Q6FYP6 Cluster: Holliday junction ATP-dependent DNA hel... 41 0.018
UniRef50_UPI0000DAE674 Cluster: hypothetical protein Rgryl_01000... 40 0.024
UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2; Deltaproteobac... 40 0.024
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 40 0.024
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 40 0.024
UniRef50_A6G1D5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.024
UniRef50_A6CF37 Cluster: Holliday junction DNA helicase B; n=1; ... 40 0.024
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 40 0.024
UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n... 40 0.024
UniRef50_Q6XM61 Cluster: FirrV-1-A26; n=1; Feldmannia irregulari... 40 0.032
UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subuni... 40 0.032
UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits; ... 40 0.032
UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subuni... 40 0.032
UniRef50_P73507 Cluster: DNA polymerase III subunit; n=1; Synech... 40 0.032
UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subun... 40 0.032
UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;... 40 0.032
UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and ... 40 0.032
UniRef50_A4M640 Cluster: AAA ATPase, central domain protein; n=1... 40 0.032
UniRef50_Q9C587 Cluster: Replication factor C large subunit-like... 40 0.032
UniRef50_Q7S356 Cluster: Putative uncharacterized protein NCU091... 40 0.032
UniRef50_A3LTW2 Cluster: Replication factor ATPase; n=1; Pichia ... 40 0.032
UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; ... 40 0.032
UniRef50_Q8KC00 Cluster: Holliday junction ATP-dependent DNA hel... 40 0.032
UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau; n... 40 0.032
UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n... 40 0.042
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 40 0.042
UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and ... 40 0.042
UniRef50_A5WC21 Cluster: AAA ATPase, central domain protein; n=3... 40 0.042
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 40 0.042
UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and t... 40 0.042
UniRef50_A0Q7R7 Cluster: AAA family-ATPase; n=11; Francisella tu... 40 0.042
UniRef50_Q4MZF5 Cluster: Replication factor C large subunit, put... 40 0.042
UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2... 40 0.042
UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2... 40 0.042
UniRef50_A7TRM5 Cluster: Putative uncharacterized protein; n=1; ... 32 0.045
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 39 0.056
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 39 0.056
UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and ... 39 0.056
UniRef50_A6DEF7 Cluster: ENDOPEPTIDASE CLP ATP-BINDING CHAIN A; ... 39 0.056
UniRef50_A5V6U8 Cluster: AAA ATPase, central domain protein; n=1... 39 0.056
UniRef50_A4EPD3 Cluster: ATPase; n=2; Rhodobacteraceae|Rep: ATPa... 39 0.056
UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3; Campylobacter|... 39 0.056
UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis tha... 39 0.056
UniRef50_Q4P8X9 Cluster: Putative uncharacterized protein; n=1; ... 39 0.056
UniRef50_A5DKE6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.056
UniRef50_A3LXJ6 Cluster: DNA-dependent ATPase MGS1 (Maintenance ... 39 0.056
UniRef50_Q96S55 Cluster: ATPase WRNIP1; n=31; Eumetazoa|Rep: ATP... 39 0.056
UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC 2.7.... 39 0.056
UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4; ... 39 0.074
UniRef50_Q896F9 Cluster: ATPase associated with chromosome archi... 39 0.074
UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1; Pe... 39 0.074
UniRef50_Q2J818 Cluster: AAA ATPase, central region; n=5; Actino... 39 0.074
UniRef50_Q28US4 Cluster: AAA ATPase protein; n=11; Proteobacteri... 39 0.074
UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit ... 39 0.074
UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12; Coryn... 39 0.074
UniRef50_A1A0Y3 Cluster: Putative uncharacterized protein; n=2; ... 39 0.074
UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1; Enterob... 39 0.074
UniRef50_Q6AGY6 Cluster: DNA polymerase III, gamma and tau subun... 38 0.097
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 38 0.097
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 38 0.097
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 38 0.097
UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and ... 38 0.097
UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and ... 38 0.097
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 38 0.097
UniRef50_A5E3H7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.097
UniRef50_Q5FLX2 Cluster: Holliday junction ATP-dependent DNA hel... 38 0.097
UniRef50_P60373 Cluster: Replication factor C large subunit; n=1... 38 0.097
UniRef50_Q8EUW0 Cluster: DNA polymerase III gamma-tau subunits; ... 38 0.13
UniRef50_Q6ANB4 Cluster: Related to DNA polymerase III, subunit ... 38 0.13
UniRef50_Q0VNM5 Cluster: DNA polymerase III, gamma and tau subun... 38 0.13
UniRef50_A6PRD7 Cluster: AAA ATPase, central domain protein; n=4... 38 0.13
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 38 0.13
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 38 0.13
UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and ... 38 0.13
UniRef50_Q9SB72 Cluster: DNA polymerase III like protein; n=2; E... 38 0.13
UniRef50_A2G4Z2 Cluster: Differentiation specific element bindin... 38 0.13
UniRef50_A1C8D4 Cluster: Cell cycle checkpoint protein rad17; n=... 38 0.13
UniRef50_P50531 Cluster: Checkpoint protein rad17; n=1; Schizosa... 38 0.13
UniRef50_P15026 Cluster: Insertion sequence IS21 putative ATP-bi... 38 0.13
UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with... 29 0.17
UniRef50_UPI0000D57862 Cluster: PREDICTED: similar to ATPase WRN... 38 0.17
UniRef50_UPI0000499E26 Cluster: AAA family ATPase; n=1; Entamoeb... 38 0.17
UniRef50_Q8CXU0 Cluster: Uncharacterized ATPase related to the h... 38 0.17
UniRef50_Q2JGD4 Cluster: DNA polymerase III, subunits gamma and ... 38 0.17
UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1; Syntr... 38 0.17
UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1; ... 38 0.17
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 38 0.17
UniRef50_A5GNS9 Cluster: ATPase related to the helicase subunit ... 38 0.17
UniRef50_A1HPS4 Cluster: DNA polymerase III, delta prime subunit... 38 0.17
UniRef50_Q0WNH1 Cluster: STICHEL; n=4; core eudicotyledons|Rep: ... 38 0.17
UniRef50_Q4QEE0 Cluster: Putative uncharacterized protein; n=3; ... 29 0.22
UniRef50_Q22DN2 Cluster: BRCA1 C Terminus (BRCT) domain; n=1; Te... 32 0.22
UniRef50_Q17LI6 Cluster: Replication factor C large subunit, put... 29 0.22
UniRef50_UPI0000D55FC7 Cluster: PREDICTED: similar to Activator ... 30 0.22
UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;... 37 0.22
UniRef50_Q8YL11 Cluster: Alr7127 protein; n=2; Cyanobacteria|Rep... 37 0.22
UniRef50_Q88WS5 Cluster: Chromosome segregation helicase; n=31; ... 37 0.22
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 37 0.22
UniRef50_Q0LFS9 Cluster: DNA polymerase III, subunits gamma and ... 37 0.22
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 37 0.22
UniRef50_A4E9C6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.22
UniRef50_A1WB62 Cluster: AAA ATPase, central domain protein; n=2... 37 0.22
UniRef50_Q2QW40 Cluster: ATPase, AAA family protein, expressed; ... 37 0.22
UniRef50_Q8Y6Z8 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.22
UniRef50_Q9MBA3 Cluster: Cell cycle checkpoint protein RAD17; n=... 37 0.22
UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n... 37 0.22
UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamo... 37 0.30
UniRef50_Q8NTR0 Cluster: DNA polymerase III, gamma/tau subunits;... 37 0.30
UniRef50_Q73K31 Cluster: DNA polymerase III, gamma and tau subun... 37 0.30
UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau subun... 37 0.30
UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subuni... 37 0.30
UniRef50_Q189A7 Cluster: Putative ATP-binding protein; n=2; Clos... 37 0.30
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 37 0.30
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 37 0.30
UniRef50_A0LGK0 Cluster: AAA ATPase, central domain protein; n=1... 37 0.30
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 37 0.30
UniRef50_Q9AYK3 Cluster: Putative replication factor; n=3; Oryza... 37 0.30
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 37 0.30
UniRef50_Q7UPG4 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.30
UniRef50_UPI00015B60A5 Cluster: PREDICTED: hypothetical protein;... 34 0.36
UniRef50_UPI00004999D6 Cluster: AAA family ATPase; n=1; Entamoeb... 36 0.39
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 36 0.39
UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n... 36 0.39
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 36 0.39
UniRef50_Q0EXX3 Cluster: DNA polymerase III subunits gamma and t... 36 0.39
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 36 0.39
UniRef50_A5IXK5 Cluster: ATPase, AAA family; n=1; Mycoplasma aga... 36 0.39
UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains... 36 0.39
UniRef50_A3IFI7 Cluster: Putative uncharacterized protein; n=1; ... 36 0.39
UniRef50_A0NHS0 Cluster: ATPase, AAA family; n=3; Bacteria|Rep: ... 36 0.39
UniRef50_Q7QUE5 Cluster: GLP_59_18656_20185; n=1; Giardia lambli... 36 0.39
UniRef50_Q75JU2 Cluster: Similar to Thermoanaerobacter tengconge... 36 0.39
UniRef50_Q97AM2 Cluster: Guanylate kinase; n=3; Thermoplasmatale... 36 0.39
UniRef50_P61530 Cluster: Holliday junction ATP-dependent DNA hel... 36 0.39
UniRef50_Q8T5T1 Cluster: Midasin; n=2; Giardia intestinalis|Rep:... 36 0.39
UniRef50_A0EHK8 Cluster: Chromosome undetermined scaffold_97, wh... 29 0.49
UniRef50_UPI00005F1A9A Cluster: transposition helper protein, IS... 36 0.52
UniRef50_Q8YJU8 Cluster: Alr9015 protein; n=2; Nostoc sp. PCC 71... 36 0.52
UniRef50_Q7NAN3 Cluster: RuvB; n=1; Mycoplasma gallisepticum|Rep... 36 0.52
UniRef50_Q5FHW6 Cluster: ATP-dependent protease; n=4; Lactobacil... 36 0.52
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 36 0.52
UniRef50_Q3WEK6 Cluster: DNA-directed DNA polymerase; n=2; Frank... 36 0.52
UniRef50_Q0EY57 Cluster: ATPase; n=1; Mariprofundus ferrooxydans... 36 0.52
UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and ... 36 0.52
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 36 0.52
UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III, gamma... 36 0.52
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 36 0.52
UniRef50_Q4FYX5 Cluster: Serine peptidase, putative; n=7; Trypan... 36 0.52
UniRef50_Q50739 Cluster: Uncharacterized AAA domain-containing p... 36 0.52
UniRef50_Q8DWI4 Cluster: Holliday junction ATP-dependent DNA hel... 36 0.52
UniRef50_P31540 Cluster: Heat shock protein HSP98; n=23; Dikarya... 36 0.52
UniRef50_P43746 Cluster: DNA polymerase III subunit gamma/tau; n... 36 0.52
UniRef50_UPI00015B415D Cluster: PREDICTED: similar to werner hel... 36 0.69
UniRef50_Q9PQU7 Cluster: Conserved hypothetical ATP/GTP-binding ... 36 0.69
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 36 0.69
UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau subun... 36 0.69
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 36 0.69
UniRef50_A7DCF5 Cluster: Holliday junction DNA helicase RuvB pre... 36 0.69
UniRef50_A5UZV8 Cluster: AAA ATPase, central domain protein; n=1... 36 0.69
UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2; Az... 36 0.69
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 36 0.69
UniRef50_Q6YPF5 Cluster: Putative DNA polymerase III like protei... 36 0.69
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 36 0.69
UniRef50_Q8SWI8 Cluster: Similarity to DNA HELICASE RUVB; n=1; E... 36 0.69
UniRef50_Q5AS54 Cluster: Putative uncharacterized protein; n=1; ... 36 0.69
UniRef50_O83110 Cluster: Chaperone protein clpB; n=21; cellular ... 36 0.69
UniRef50_Q7NAZ3 Cluster: Chaperone protein clpB; n=8; Mollicutes... 36 0.69
UniRef50_Q7VJY3 Cluster: Chaperone protein clpB; n=52; Bacteria|... 36 0.69
UniRef50_UPI0000D56DA8 Cluster: PREDICTED: similar to CG16838-PD... 28 0.83
UniRef50_UPI0000E80CAE Cluster: PREDICTED: hypothetical protein;... 35 0.91
UniRef50_Q9RKL5 Cluster: DNA polymerase III subunit gamma; n=2; ... 35 0.91
UniRef50_Q8RGJ6 Cluster: ATPase associated with chromosome archi... 35 0.91
UniRef50_Q8G6Y0 Cluster: DNA polymerase III subunit gamma/tau; n... 35 0.91
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 35 0.91
UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau; ... 35 0.91
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 35 0.91
UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and ... 35 0.91
UniRef50_Q26GD5 Cluster: DNA /RNA helicase, superfamily I; n=1; ... 35 0.91
UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau subun... 35 0.91
UniRef50_A6FTR6 Cluster: DNA-directed DNA polymerase gamma/tau s... 35 0.91
UniRef50_A6EJ04 Cluster: Magnesium chelatase, subunit ChlI; n=2;... 35 0.91
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 35 0.91
UniRef50_A4SMN2 Cluster: DNA polymerase III, subunits gamma and ... 35 0.91
UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subuni... 35 0.91
UniRef50_Q018B7 Cluster: MKIAA1631 protein; n=2; Ostreococcus|Re... 35 0.91
UniRef50_A4S216 Cluster: Predicted protein; n=2; Ostreococcus|Re... 35 0.91
UniRef50_Q6RHU1 Cluster: Gp44 clamp loader subunit; n=2; T4-like... 35 0.91
UniRef50_Q4UBG2 Cluster: Replication factor c-related protein, p... 35 0.91
UniRef50_A5DZ06 Cluster: Putative uncharacterized protein; n=1; ... 35 0.91
UniRef50_Q8TXG6 Cluster: Predicted AAA+ class ATPase with chaper... 35 0.91
UniRef50_Q8F7Y2 Cluster: Holliday junction ATP-dependent DNA hel... 35 0.91
UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit; ... 35 1.2
UniRef50_Q899V4 Cluster: Negative regulator of genetic competenc... 35 1.2
UniRef50_Q73L29 Cluster: ATPase, AAA family; n=2; Treponema|Rep:... 35 1.2
UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n... 35 1.2
UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit... 35 1.2
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 35 1.2
UniRef50_Q0TPP9 Cluster: Mg chelatase-like protein; n=3; Clostri... 35 1.2
UniRef50_A6LJD0 Cluster: AAA ATPase, central domain protein; n=2... 35 1.2
UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1; Limnob... 35 1.2
UniRef50_A5ADM6 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_A2DRZ5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, wh... 35 1.2
UniRef50_Q5K9N8 Cluster: Purine nucleotide binding protein, puta... 35 1.2
UniRef50_Q1E568 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_A1DAZ0 Cluster: Cell cycle checkpoint protein rad17; n=... 35 1.2
UniRef50_Q9A1Y1 Cluster: Holliday junction ATP-dependent DNA hel... 35 1.2
UniRef50_Q6L0P4 Cluster: Replication factor C large subunit; n=1... 35 1.2
UniRef50_P49956 Cluster: Chromosome transmission fidelity protei... 35 1.2
UniRef50_Q4SDG1 Cluster: Chromosome undetermined SCAF14638, whol... 34 1.6
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 34 1.6
UniRef50_Q67QC7 Cluster: IstB helper protein N-terminal domain; ... 34 1.6
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 34 1.6
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 34 1.6
UniRef50_Q9AIX4 Cluster: DNA polymerase III-like protein; n=2; W... 34 1.6
UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subuni... 34 1.6
UniRef50_Q3W3R9 Cluster: GGDEF; n=5; Frankia sp. EAN1pec|Rep: GG... 34 1.6
UniRef50_Q0LQN6 Cluster: ATPase AAA-2; n=1; Herpetosiphon aurant... 34 1.6
UniRef50_A6EX05 Cluster: DNA polymerase III subunits gamma and t... 34 1.6
UniRef50_A3WR60 Cluster: DNA polymerase III subunits gamma and t... 34 1.6
UniRef50_A3KKG4 Cluster: Putative regulatory protein AfsR-like; ... 34 1.6
UniRef50_A1U128 Cluster: DNA polymerase III, subunits gamma and ... 34 1.6
UniRef50_Q4G3D3 Cluster: Hypothetical chloroplast RF45; n=1; Emi... 34 1.6
UniRef50_Q4QHQ1 Cluster: Putative uncharacterized protein; n=3; ... 34 1.6
UniRef50_A1CI50 Cluster: AAA family ATPase, putative; n=15; Pezi... 34 1.6
UniRef50_Q8PTL5 Cluster: Transposase; n=11; cellular organisms|R... 34 1.6
UniRef50_Q74N18 Cluster: NEQ401; n=1; Nanoarchaeum equitans|Rep:... 34 1.6
UniRef50_P51281 Cluster: Uncharacterized protein ycf45; n=23; ce... 34 1.6
UniRef50_Q19020 Cluster: Dynein heavy chain, cytosolic; n=15; Bi... 34 1.6
UniRef50_P35600 Cluster: Replication factor C subunit 1; n=3; Di... 28 1.8
UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12; Xanth... 34 2.1
UniRef50_Q8A147 Cluster: Putative DNA polymerase III, delta subu... 34 2.1
UniRef50_Q895L6 Cluster: Mg(2+) chelatase family protein; n=8; C... 34 2.1
UniRef50_Q83FL2 Cluster: DNA polymerase III gamma and tau subuni... 34 2.1
UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4; Bo... 34 2.1
UniRef50_Q3SLE5 Cluster: DNA polymerase subunits gamma and tau; ... 34 2.1
UniRef50_Q31JI2 Cluster: ATPase associated with various cellular... 34 2.1
UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and ... 34 2.1
UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and ... 34 2.1
UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella t... 34 2.1
UniRef50_A6P155 Cluster: Putative uncharacterized protein; n=1; ... 34 2.1
UniRef50_A6NYA1 Cluster: Putative uncharacterized protein; n=1; ... 34 2.1
UniRef50_A6FN73 Cluster: Putative uncharacterized protein; n=1; ... 34 2.1
UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and ... 34 2.1
UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and ... 34 2.1
UniRef50_A4GJ98 Cluster: DNA polymerase III subunits gamma/tau; ... 34 2.1
UniRef50_A1UPP4 Cluster: IstB domain protein ATP-binding protein... 34 2.1
UniRef50_A1IEP1 Cluster: ATPase, AAA family; n=2; Bacteria|Rep: ... 34 2.1
UniRef50_A0WAR2 Cluster: ATPase associated with various cellular... 34 2.1
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 34 2.1
UniRef50_A4RSN2 Cluster: Predicted protein; n=1; Ostreococcus lu... 34 2.1
UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6; Pl... 34 2.1
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 34 2.1
UniRef50_A3CU17 Cluster: AAA ATPase; n=1; Methanoculleus marisni... 34 2.1
UniRef50_P96115 Cluster: Holliday junction ATP-dependent DNA hel... 34 2.1
UniRef50_Q600N3 Cluster: Holliday junction ATP-dependent DNA hel... 34 2.1
UniRef50_P35594 Cluster: ATP-dependent Clp protease ATP-binding ... 34 2.1
UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1... 33 2.8
UniRef50_UPI00005F03FA Cluster: COG2801: Transposase and inactiv... 33 2.8
UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus ... 33 2.8
UniRef50_Q73L70 Cluster: Magnesium chelatase family protein; n=1... 33 2.8
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 33 2.8
UniRef50_Q67LJ7 Cluster: Putative uncharacterized protein; n=1; ... 33 2.8
UniRef50_Q5FKX4 Cluster: Chromosomal segregation helicase; n=113... 33 2.8
UniRef50_Q3A5K5 Cluster: ATPase, AAA family; n=5; Desulfuromonad... 33 2.8
UniRef50_Q1QXJ7 Cluster: DNA polymerase III, subunits gamma and ... 33 2.8
UniRef50_Q1N528 Cluster: ATPase with chaperone activity, ATP-bin... 33 2.8
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 33 2.8
UniRef50_A6BHP0 Cluster: ATP-dependent protease La; n=2; Clostri... 33 2.8
UniRef50_A0GWE3 Cluster: Superfamily I DNA and RNA helicases and... 33 2.8
UniRef50_Q9SN33 Cluster: Putative uncharacterized protein F28A21... 33 2.8
UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3; ... 33 2.8
UniRef50_A7PHX9 Cluster: Chromosome chr13 scaffold_17, whole gen... 33 2.8
UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas sal... 33 2.8
UniRef50_A5ANB7 Cluster: Putative uncharacterized protein; n=1; ... 33 2.8
UniRef50_Q8SYV6 Cluster: RE31829p; n=3; Drosophila melanogaster|... 33 2.8
UniRef50_Q4N3L0 Cluster: Replication factor C, putative; n=3; Th... 33 2.8
UniRef50_A7SP76 Cluster: Predicted protein; n=1; Nematostella ve... 33 2.8
UniRef50_Q96QE3 Cluster: Chromosome fragility-associated gene 1 ... 33 2.8
UniRef50_Q2H5X7 Cluster: Putative uncharacterized protein; n=1; ... 33 2.8
UniRef50_P75242 Cluster: Holliday junction ATP-dependent DNA hel... 33 2.8
UniRef50_Q7VBL0 Cluster: Chaperone protein clpB; n=9; Bacteria|R... 33 2.8
UniRef50_UPI0000E46AAA Cluster: PREDICTED: similar to helicase; ... 33 3.7
UniRef50_UPI000049A1E8 Cluster: HSP101-related protein; n=8; Ent... 33 3.7
UniRef50_Q9ZCA1 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 33 3.7
UniRef50_Q8KFX9 Cluster: ATP-dependent Clp protease, ATP-binding... 33 3.7
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 33 3.7
UniRef50_Q3J800 Cluster: DNA-directed DNA polymerase; n=1; Nitro... 33 3.7
UniRef50_Q3IKN4 Cluster: Putative DnaX, DNA polymerase III, gamm... 33 3.7
UniRef50_P72964 Cluster: Ycf45 protein; n=10; Cyanobacteria|Rep:... 33 3.7
UniRef50_Q4MV26 Cluster: DNA polymerase III, gamma and tau subun... 33 3.7
UniRef50_Q18ZH2 Cluster: ATPase associated with various cellular... 33 3.7
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 33 3.7
UniRef50_Q05HK5 Cluster: Putative AfsR-like regulatory protein; ... 33 3.7
UniRef50_A7H8J8 Cluster: ATP-dependent helicase HrpB; n=3; Bacte... 33 3.7
UniRef50_A7H7E2 Cluster: Putative phosphohistidine phosphatase, ... 33 3.7
UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and t... 33 3.7
UniRef50_A5Z851 Cluster: Putative uncharacterized protein; n=2; ... 33 3.7
UniRef50_A4E6Q7 Cluster: Putative uncharacterized protein; n=2; ... 33 3.7
UniRef50_A3ZY66 Cluster: MoxR-related protein; n=1; Blastopirell... 33 3.7
UniRef50_A1T767 Cluster: Mg chelatase, subunit ChlI; n=5; Actino... 33 3.7
UniRef50_Q3E9F3 Cluster: Uncharacterized protein At5g18370.1; n=... 33 3.7
UniRef50_Q6J2Q0 Cluster: Gp44; n=1; Acinetobacter phage 133|Rep:... 33 3.7
UniRef50_Q8X080 Cluster: Related to replication factor C protein... 33 3.7
UniRef50_P78622 Cluster: Replication factor C like protein; n=5;... 33 3.7
UniRef50_A3CX33 Cluster: PilT protein domain protein; n=1; Metha... 33 3.7
UniRef50_P26047 Cluster: Signal-transduction and transcriptional... 33 3.7
UniRef50_Q8KA87 Cluster: Probable chaperone protein clpB 2; n=15... 33 3.7
UniRef50_Q4SLJ4 Cluster: Chromosome 15 SCAF14556, whole genome s... 33 4.8
UniRef50_Q9FBV7 Cluster: Putative ATP/GTP-binding protein; n=1; ... 33 4.8
UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;... 33 4.8
UniRef50_Q8NPM2 Cluster: ATPases with chaperone activity, ATP-bi... 33 4.8
>UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit,
putative; n=5; Eukaryota|Rep: Replication factor C,
37kD-subunit, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 147
Score = 109 bits (263), Expect = 3e-23
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K +LPWIEKYRPQ F++IVGNEDTVSRL VFA GNAPNIIIAGPPGVGKTTTIL LAR
Sbjct: 23 KKKSLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILCLAR 82
Query: 181 V 183
+
Sbjct: 83 I 83
Score = 37.1 bits (82), Expect = 0.22
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 183 LLGVSFKDAVLXLNASXDRGIDVV 254
LLG +F++AVL LNAS +RGIDVV
Sbjct: 84 LLGENFREAVLELNASNERGIDVV 107
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 104 bits (250), Expect = 1e-21
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R KIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM +YS TTRFALA N S
Sbjct: 134 RNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTS 191
Score = 95.5 bits (227), Expect = 6e-19
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K LPW+EKYRP +IVGNE+TVSRL VFA+ GN PNIIIAGPPG GKTT+IL LAR
Sbjct: 49 KGFELPWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLAR 108
Score = 43.2 bits (97), Expect = 0.003
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 180 SLLGVSFKDAVLXLNASXDRGIDVV 254
+LLGVS KDAVL LNAS DRGIDVV
Sbjct: 109 ALLGVSLKDAVLELNASNDRGIDVV 133
Score = 33.9 bits (74), Expect = 2.1
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +3
Query: 426 VIEICNKENLSYTEEGVSAVVFTAQG 503
++EIC+KE + ++G+ A++FTA+G
Sbjct: 219 LLEICDKEQVPKVDDGLEAIIFTAEG 244
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 103 bits (248), Expect = 2e-21
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R KIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTM +YS TTRFALA N S
Sbjct: 117 RNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNAS 174
Score = 96.7 bits (230), Expect = 3e-19
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
LPW+EKYRP ++IVGNEDTVSRL VFA+ GN PNIIIAGPPG GKTT+IL LAR
Sbjct: 36 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLAR 91
Score = 38.3 bits (85), Expect = 0.097
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 180 SLLGVSFKDAVLXLNASXDRGIDVV 254
+LLG + KDA+L LNAS DRGIDVV
Sbjct: 92 ALLGPALKDAMLELNASNDRGIDVV 116
Score = 33.5 bits (73), Expect = 2.8
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 426 VIEICNKENLSYTEEGVSAVVFTAQG 503
++ + KE + YT++G+ A++FTAQG
Sbjct: 202 LMNVIEKERVPYTDDGLEAIIFTAQG 227
>UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4252,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 331
Score = 96.3 bits (229), Expect = 3e-19
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
LPW+EKYRP D IVGNE+TVSRL VFA+ GN PNIIIAGPPG GKTT+IL LAR
Sbjct: 18 LPWVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLAR 73
Score = 56.8 bits (131), Expect = 3e-07
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADS 340
R KIKMFAQQKVTLP GRHKI+ILDEADS
Sbjct: 101 RNKIKMFAQQKVTLPKGRHKIIILDEADS 129
Score = 36.3 bits (80), Expect = 0.39
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Frame = +3
Query: 180 SLLGVSFKDAVLXLNASXD--RGIDVV 254
+LLG S KDAVL LNAS D RGIDVV
Sbjct: 74 ALLGASMKDAVLELNASNDRHRGIDVV 100
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 89.4 bits (212), Expect = 4e-17
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+ N PW+EKYRPQT DIVGN + +SRL V AK GN PN+++ GPPG GKTT++L LAR
Sbjct: 3 TVNTPWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLAR 61
Score = 73.7 bits (173), Expect = 2e-12
Identities = 46/79 (58%), Positives = 51/79 (64%), Gaps = 16/79 (20%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLP-----PGR-----------HKIVILDEADSMTDGAQQALRRTMXL 385
R KIK+FAQ K TLP G HKIV+LDEADSMT AQQALRRTM L
Sbjct: 104 REKIKLFAQTKKTLPRKFFSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMEL 163
Query: 386 YSSTTRFALAANNSYRDLQ 442
+SSTTRFA A NNS R ++
Sbjct: 164 HSSTTRFAFACNNSSRIIE 182
Score = 33.1 bits (72), Expect = 3.7
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 201 KDAVLXLNASXDRGIDVV 254
KDAVL LNAS DRG+DVV
Sbjct: 86 KDAVLELNASDDRGLDVV 103
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 85.4 bits (202), Expect = 6e-16
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R +IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M LYS TTRFALA N S
Sbjct: 97 RDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQS 154
Score = 68.1 bits (159), Expect = 1e-10
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
WIEKYRP+ D++VGN ++ L +GN PN+++AG PG GKTT+IL LA
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLA 70
Score = 33.9 bits (74), Expect = 2.1
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 426 VIEICNKENLSYTEEGVSAVVFTAQG 503
+++IC+ EN+ YT++G+ A+ F A G
Sbjct: 182 ILKICDLENIKYTDDGLDALTFIADG 207
Score = 32.7 bits (71), Expect = 4.8
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 174 SASLLGVSFKDAVLXLNASXDRGIDVVGIR*K 269
++ +LG K AVL LNAS DRGI+V+ R K
Sbjct: 70 ASEMLGNQAKKAVLELNASDDRGINVIRDRIK 101
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 83.4 bits (197), Expect = 3e-15
Identities = 34/57 (59%), Positives = 44/57 (77%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
NL W+EKYRP+T D++ GN D V +L AK GN PNII+ GPPG+GKT+++L LAR
Sbjct: 4 NLIWLEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLAR 60
Score = 76.6 bits (180), Expect = 3e-13
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R +IK FAQ+KV L G+HKIVILDEADS+T+GAQQALR + YS++TRF L+ N+S
Sbjct: 86 REQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQALRMIISDYSTSTRFVLSCNDS 143
Score = 33.5 bits (73), Expect = 2.8
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 183 LLGVSFKDAVLXLNASXDRGIDVVGIR*KCLRNKRL 290
+LG S K++VL LNAS DRGI+ V + K K++
Sbjct: 62 ILGDSIKESVLELNASDDRGIETVREQIKGFAQKKV 97
Score = 32.7 bits (71), Expect = 4.8
Identities = 11/26 (42%), Positives = 23/26 (88%)
Frame = +3
Query: 426 VIEICNKENLSYTEEGVSAVVFTAQG 503
++EI ++E+++YT++G+ A+ FTA+G
Sbjct: 171 LLEIISQESVTYTKDGLDALTFTAEG 196
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein]
- Methanopyrus kandleri
Length = 635
Score = 75.8 bits (178), Expect = 5e-13
Identities = 31/56 (55%), Positives = 38/56 (67%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+PW+EKYRP+ DDIV E V RL + G+ PN++ AGPPG GKTT L LAR
Sbjct: 11 IPWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLAR 66
Score = 57.6 bits (133), Expect = 1e-07
Identities = 30/58 (51%), Positives = 39/58 (67%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R K+K FA+ + + R KI+ LDEAD++T +QQALRR M +YS RF LAAN S
Sbjct: 397 RTKVKNFARTR-PMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDACRFILAANYS 453
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 74.9 bits (176), Expect = 9e-13
Identities = 28/60 (46%), Positives = 44/60 (73%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K+ N+PWIEKYRP T D+++ +E+ V+ + F + PN+++ GPPG GKT+TI+ LA+
Sbjct: 11 KNKNIPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIALAK 70
Score = 48.0 bits (109), Expect = 1e-04
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +2
Query: 254 RXKIKMFAQ-QKVTLPPGRH---KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R IK FA+ Q T ++ K+VILDEAD+MT AQ ALRR + Y+ TTRF N
Sbjct: 96 RETIKGFAESQSFTFTKDKNTSIKLVILDEADAMTAAAQFALRRIIEKYAKTTRFCFICN 155
Query: 422 N 424
+
Sbjct: 156 H 156
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 74.1 bits (174), Expect = 2e-12
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
NLPW+EKYRP T DD+ G++D ++ + F P++++ GPPG GKT+TIL LAR
Sbjct: 42 NLPWVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALAR 98
Score = 50.4 bits (115), Expect = 2e-05
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +2
Query: 308 HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
+K++ILDEAD+MT AQ ALRR M Y++ TRF + AN +++
Sbjct: 154 YKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHK 195
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 72.9 bits (171), Expect = 4e-12
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
LPW+EKYRP + DD+V ++D S + F + G P++++ GPPG GKT+T+L LAR
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALAR 109
Score = 50.8 bits (116), Expect = 2e-05
Identities = 27/56 (48%), Positives = 33/56 (58%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R +IK FA KV G K+VILDEAD MT AQ ALRR + ++ RF + N
Sbjct: 135 REQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCN 189
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 72.5 bits (170), Expect = 5e-12
Identities = 27/56 (48%), Positives = 43/56 (76%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+PW+EKYRP++F DI+ ++D +S L FA+ G P+++ GPPG GKT+TI+ ++R
Sbjct: 7 VPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSR 62
Score = 50.0 bits (114), Expect = 3e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K++ILDEAD MT+ AQ +LRR M +YSS RF L N
Sbjct: 117 KLIILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICN 153
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 72.5 bits (170), Expect = 5e-12
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
NLPW+EKYRP+T D++ G + ++ + F G P+++ GPPG GKT+TI+ LAR
Sbjct: 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68
Score = 54.0 bits (124), Expect = 2e-06
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
R +IK FA + G K++ILDEAD+MT+ AQ ALRR + Y+ TRF + AN +++
Sbjct: 94 RNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 152
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 72.1 bits (169), Expect = 6e-12
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
LP+IE+YRP+T D ++GN + ++RL FA GN PNI+ AG PG+GKTT L LA
Sbjct: 4 LPFIERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLA 58
Score = 69.7 bits (163), Expect = 3e-11
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
R K+K FAQ++VTLP G K+V LDE D+MT+ AQQ LRR M + +TRF LA NN
Sbjct: 85 RAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNN 141
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 72.1 bits (169), Expect = 6e-12
Identities = 28/60 (46%), Positives = 42/60 (70%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K NLPW+EKYRPQT +D++ ++D +S + F P++++ GPPG GKT+TIL A+
Sbjct: 16 KIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAK 75
Score = 48.4 bits (110), Expect = 9e-05
Identities = 26/56 (46%), Positives = 32/56 (57%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R I FA + G K+VILDEAD+MT AQ ALRR + ++ TRF L N
Sbjct: 102 RGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICN 156
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 71.3 bits (167), Expect = 1e-11
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 162
PW+EKYRPQ D+IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 16 PWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
Score = 58.8 bits (136), Expect = 6e-08
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
R K+K FA+ K + KI+ LDEAD++T AQQALRRTM ++SS RF L+ N S +
Sbjct: 621 REKVKEFARTK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSK 679
Query: 434 DLQ 442
++
Sbjct: 680 IIE 682
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 70.9 bits (166), Expect = 1e-11
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
NLPW+EKYRP+ DDIV E+ V L +TG+ P++I GPPG GKT+ L L R
Sbjct: 7 NLPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCR 63
Score = 55.2 bits (127), Expect = 8e-07
Identities = 32/58 (55%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R IK FA + +P G+ KIVILDEADSMT AQ ALRR + YSS TRF + N
Sbjct: 89 RSSIKEFAS--LAVPNGKIPFKIVILDEADSMTSAAQNALRRIIETYSSVTRFIIICN 144
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 70.1 bits (164), Expect = 3e-11
Identities = 27/54 (50%), Positives = 40/54 (74%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 165
+++LPW+EKYRP T + +V +ED +S L +GN P++++ GPPG GKTTTI
Sbjct: 14 ASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTI 67
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 296 PPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
P + K+VILDEAD M+ AQ ALRR + Y+ RF + N+
Sbjct: 128 PAAKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNH 170
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 70.1 bits (164), Expect = 3e-11
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
++NLPW+EKYRP D++V +E V L F + P+++ GPPG GKTTT+L AR
Sbjct: 26 ASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAAR 84
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K+VILDEAD+MT AQ ALRR + Y+ RF + N
Sbjct: 138 KLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICN 174
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 69.7 bits (163), Expect = 3e-11
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R IK F ++K+ LP KIVILDEADSMT A QALRRTM ++S TTRF LA N
Sbjct: 88 RSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACN 143
Score = 64.9 bits (151), Expect = 1e-09
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
+PW+EKYRP+ D+I+GN D + L F + P++++ G PG+GKTT+I LA
Sbjct: 7 IPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLA 61
Score = 32.3 bits (70), Expect = 6.4
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 183 LLGVSFKDAVLXLNASXDRGIDVVGIR*KCLRNKRLL 293
LL +KDAVL LNAS +RGI+ + K K+L+
Sbjct: 64 LLKDRYKDAVLELNASDERGIETIRSTIKSFCEKKLV 100
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC
small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2
intein]; n=2; Euryarchaeota|Rep: Replication factor C
small subunit (RFC small subunit) (Clamp loader small
subunit) (PabRFC small subunit) [Contains: Pab RFC-1
intein; Pab RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 69.7 bits (163), Expect = 3e-11
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 162
PW+EKYRPQ ++IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 16 PWVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
Score = 55.2 bits (127), Expect = 8e-07
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
R K+K FA+ K + KI+ LDEAD++T AQQALRRTM ++SS RF L+
Sbjct: 595 REKVKEFARTK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS 647
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 68.5 bits (160), Expect = 8e-11
Identities = 30/55 (54%), Positives = 37/55 (67%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW+EKYRPQT DD+VG E V RL + + + PNI+ G GVGKTT L LA+
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAK 58
Score = 52.0 bits (119), Expect = 7e-06
Identities = 28/58 (48%), Positives = 36/58 (62%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R +IK F + K P R I+ LDE D+MT AQQALRR M +Y+ T+ F L+ N S
Sbjct: 84 RNEIKSFCKLKAVGAPFR--IIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYS 139
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 67.7 bits (158), Expect = 1e-10
Identities = 29/58 (50%), Positives = 36/58 (62%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
K + W EKYRP+T DDIV + + RL F K N P+++ AGPPG GKTT L L
Sbjct: 4 KVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALAL 61
Score = 60.5 bits (140), Expect = 2e-08
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R K+K FA+ T+ PG K+V+LDEAD+MT AQQALRRTM LY+ TRF LA N
Sbjct: 89 RNKVKEFAR---TVIPGDIPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACN 143
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 66.9 bits (156), Expect = 2e-10
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K + PW+EKYRP+ DD+ + V L TGN P+++ GPPG GKT+TIL LA+
Sbjct: 31 KLHHTPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAK 90
Score = 56.8 bits (131), Expect = 3e-07
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +2
Query: 296 PPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
PP +KI+ILDEADSMT+ AQ ALRRTM Y++ TRFAL N
Sbjct: 142 PP--YKIIILDEADSMTNDAQSALRRTMETYANITRFALVCN 181
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 66.5 bits (155), Expect = 3e-10
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW+EKYRP +DI+ +E +S + F + G P++++ GPPG GKT+TIL + +
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCK 68
Score = 47.2 bits (107), Expect = 2e-04
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 254 RXKIKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R +IK FA+ K T K++ILDEAD MT AQ A+RR M Y+ RF L N
Sbjct: 94 RDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCN 152
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 65.7 bits (153), Expect = 6e-10
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Frame = +2
Query: 254 RXKIKMFAQQKV-TLP-PGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R +K FA+ +V T P P KIV+LDEADSMT GA QALRR M +YSSTTRF + NNS
Sbjct: 86 RTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNS 145
Query: 428 YRDLQ 442
+ ++
Sbjct: 146 TKIIE 150
Score = 56.4 bits (130), Expect = 3e-07
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTI 165
T PW+EKYRP F ++VGN+ ++S L+ + AK + P+++I GP G GKT +
Sbjct: 2 TAQPWVEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCV 55
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 65.7 bits (153), Expect = 6e-10
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 162
PW+EKYRP+T DDIVG ++ V RL + + + P+++ +GPPGVGK T
Sbjct: 8 PWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 56
Score = 47.6 bits (108), Expect = 2e-04
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
R K+K FA+ K + KI+ LDE+D++T AQ ALRRTM YS RF L+
Sbjct: 1072 RTKVKDFARTK-PIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFILS 1124
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 65.3 bits (152), Expect = 7e-10
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
N+PW+EKYRP+ DDIV + V L +T N P++I GPPG GKT+ I LA
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALA 58
Score = 52.4 bits (120), Expect = 6e-06
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +2
Query: 260 KIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K K+ ++ K LP K+V+LDEAD MT+ AQ ALRR + +YS+ TRF L N
Sbjct: 99 KNKIHSETKEVLPSW--KLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICN 150
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 65.3 bits (152), Expect = 7e-10
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
WIEKYRP + + G E+T+ RL + T N P+++ +GPPGVGKT + + +AR
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAR 68
Score = 53.6 bits (123), Expect = 2e-06
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R KIK FA+ T P G KI+ LDEAD++T AQ ALRRTM +SS RF L+ N S
Sbjct: 95 RNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYS 151
Query: 428 YRDLQ 442
+ ++
Sbjct: 152 SKIIE 156
>UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8;
Eutheria|Rep: Replication factor C subunit 2 - Rattus
norvegicus (Rat)
Length = 216
Score = 64.5 bits (150), Expect = 1e-09
Identities = 31/36 (86%), Positives = 32/36 (88%)
Frame = +2
Query: 320 ILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
ILDEADSMTDGAQQALRRTM +YS TTRFALA N S
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNAS 36
Score = 33.5 bits (73), Expect = 2.8
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 426 VIEICNKENLSYTEEGVSAVVFTAQG 503
++ + KE + YT++G+ A++FTAQG
Sbjct: 64 LMNVIEKEKVPYTDDGLEAIIFTAQG 89
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 64.1 bits (149), Expect = 2e-09
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW+EKYRP+ +D+V + V L K G+ PN++ GPPG GKT+TIL AR
Sbjct: 33 PWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAAR 87
Score = 51.2 bits (117), Expect = 1e-05
Identities = 33/64 (51%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Frame = +2
Query: 254 RXKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFA 409
R KIK FAQ + PP KI++LDEADSMT AQ ALRRTM S +TRF
Sbjct: 113 REKIKSFAQLTAGGMRDDGKSCPP--FKIIVLDEADSMTGAAQAALRRTMEKESHSTRFC 170
Query: 410 LAAN 421
L N
Sbjct: 171 LICN 174
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 64.1 bits (149), Expect = 2e-09
Identities = 24/55 (43%), Positives = 39/55 (70%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW+EKYRP+T ++ ++T+ L+ ++ N P+++ GPPG GKT+TIL LA+
Sbjct: 34 PWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAK 88
Score = 55.6 bits (128), Expect = 6e-07
Identities = 28/48 (58%), Positives = 32/48 (66%)
Frame = +2
Query: 278 QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
+ K + PP KI++LDEADSMT AQ ALRRTM YS TRF L N
Sbjct: 150 RDKYSCPP--FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCN 195
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 63.7 bits (148), Expect = 2e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+LPW EKYRP ++V +E + + FA G P+++ GPPG GKT+T+L L R
Sbjct: 14 HLPWTEKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGTGKTSTVLALTR 70
Score = 44.0 bits (99), Expect = 0.002
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K+VI+DE DS+T AQ ALRR M Y+ TRF L N
Sbjct: 114 KLVIMDECDSLTKDAQFALRRIMEKYAQHTRFCLICN 150
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 63.3 bits (147), Expect = 3e-09
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
LPW +KYRP T +VG ++T+S L F P+++ GPPG GKT+TIL LAR
Sbjct: 19 LPWQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTILALAR 74
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +2
Query: 296 PPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
P K+VILDEAD+M AQ ALRR + Y++ TRF + NN ++
Sbjct: 122 PYNMFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHK 167
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 62.9 bits (146), Expect = 4e-09
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+LPW+EKYRP T D I G+E + L F P+++ GPPG GKTTT L + +
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVK 58
Score = 46.4 bits (105), Expect = 4e-04
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R +IK FA + TL K +ILDE+D +T AQ ALRRT+ +S+ RF N
Sbjct: 84 RDQIKSFASTR-TLYTNCTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICN 138
Score = 32.3 bits (70), Expect = 6.4
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +3
Query: 183 LLGVSFKDAVLXLNASXDRGIDVVGIR*KCLRNKRLL 293
L G F VL LNAS +RGIDVV + K + R L
Sbjct: 60 LCGTKFSALVLELNASDERGIDVVRDQIKSFASTRTL 96
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 62.9 bits (146), Expect = 4e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
S+NL W+EKYRP DI ++D VS L+ K GN P+++ GPPG GKT+ +L L+R
Sbjct: 5 SSNL-WVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSR 62
Score = 42.7 bits (96), Expect = 0.005
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
KIVILDEA+ MT AQ ALRR + + S TRF + N
Sbjct: 117 KIVILDEAEMMTADAQSALRRIIEVSSKNTRFVIICN 153
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 62.5 bits (145), Expect = 5e-09
Identities = 22/60 (36%), Positives = 39/60 (65%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+ LPW+EKYRP D++ ++D ++ + F +G P+++ GPPG GKT+TI +++
Sbjct: 8 EEAQLPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISK 67
Score = 44.8 bits (101), Expect = 0.001
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K++ILDEAD MT AQ ALRR M YS RF + N
Sbjct: 141 KLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICN 177
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 62.5 bits (145), Expect = 5e-09
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K+ +PW+EKYRP+ D++ E+ V+ L + + PN++ GPPG GKT+TIL AR
Sbjct: 34 KAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAR 93
Score = 56.0 bits (129), Expect = 5e-07
Identities = 35/62 (56%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Frame = +2
Query: 254 RXKIKMFAQQKVT------LPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
R K+K FAQ V+ P KIVILDEADSMT AQ ALRRTM S TTRF L
Sbjct: 120 REKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 416 AN 421
N
Sbjct: 180 CN 181
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 62.1 bits (144), Expect = 7e-09
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K +PW+EKYRP+ D++ E+ V+ L + + PN++ GPPG GKT+TIL AR
Sbjct: 29 KQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAR 88
Score = 59.3 bits (137), Expect = 5e-08
Identities = 36/62 (58%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Frame = +2
Query: 254 RXKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
R K+K FAQ V T P G+ KI+ILDEADSMT AQ ALRRTM S TTRF L
Sbjct: 115 REKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLI 174
Query: 416 AN 421
N
Sbjct: 175 CN 176
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 62.1 bits (144), Expect = 7e-09
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
WIEKYRPQT DD++G+E+ V RL + + +++ +GP G GKTT +AR
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIAR 69
Score = 50.0 bits (114), Expect = 3e-05
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R +IK FA + + ++I+ LDEAD++T AQ ALRRTM +S+ RF L+ N S
Sbjct: 95 RDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 150
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 62.1 bits (144), Expect = 7e-09
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR-VSS 189
LPW+EKYRPQ D I+ N D + L F ++ P+++ GP G GKT+TI AR +
Sbjct: 17 LPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYG 76
Query: 190 EYLS 201
+Y++
Sbjct: 77 KYIN 80
Score = 47.6 bits (108), Expect = 2e-04
Identities = 31/62 (50%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +2
Query: 254 RXKIKMFAQQK--VTLPPGRH---KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAA 418
R KIK F K + LP G K+VILDE DSMT AQ LR+T+ S TTRF L
Sbjct: 98 RTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLIC 157
Query: 419 NN 424
N+
Sbjct: 158 ND 159
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 62.1 bits (144), Expect = 7e-09
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW+EKYRP+ D++ + V+ L K+ N P+++ GPPG GKT+TIL L +
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80
Score = 55.6 bits (128), Expect = 6e-07
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGR---------HKIVILDEADSMTDGAQQALRRTMXLYSSTTRF 406
R K+K FA+ V+ P +KI+ILDEADSMT AQ ALRRTM YS TRF
Sbjct: 107 REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRF 166
Query: 407 ALAAN 421
L N
Sbjct: 167 CLICN 171
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 61.7 bits (143), Expect = 9e-09
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW+EKYRP+ D+V ++ L KTG+ P+++ GPPG GKT+TIL LAR
Sbjct: 3 PWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALAR 57
Score = 55.2 bits (127), Expect = 8e-07
Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 254 RXKIKMFAQQKVT-LPPG--RHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R KIK F++ ++ PG K+VILDEAD+MT AQ ALRRTM +S TRF L N
Sbjct: 84 RDKIKTFSKMSISSFQPGCPPFKLVILDEADTMTADAQSALRRTMETHSVVTRFCLVCN 142
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 61.7 bits (143), Expect = 9e-09
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
++PW+EKYRP+T D++ + VS L + PN++ GPPG GKT+ IL LAR
Sbjct: 24 HIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALAR 80
Score = 50.4 bits (115), Expect = 2e-05
Identities = 26/43 (60%), Positives = 30/43 (69%)
Frame = +2
Query: 293 LPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
+PP +K++ILDEADSMT AQ ALRRTM TTRF L N
Sbjct: 134 IPP--YKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCN 174
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 61.7 bits (143), Expect = 9e-09
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
LPW+EKYRP +++ E+ + L +GN P++I+ GPPG GKT++IL A+
Sbjct: 42 LPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAK 97
Score = 56.4 bits (130), Expect = 3e-07
Identities = 34/62 (54%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRH------KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
R KIK FAQQ V+ P + KI+ILDEADSMT AQ ALRR + SSTTRF +
Sbjct: 124 RDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCII 183
Query: 416 AN 421
N
Sbjct: 184 CN 185
>UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4;
Thermococcaceae|Rep: Replication factor C large subunit
- Pyrococcus abyssi
Length = 479
Score = 61.7 bits (143), Expect = 9e-09
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTILXL 174
+PW+EKYRP+ +I+ ED +S++ + + GN P +++AGPPG GKTTT+ L
Sbjct: 4 VPWVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYAL 63
Query: 175 AR 180
AR
Sbjct: 64 AR 65
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 60.9 bits (141), Expect = 2e-08
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
LPW+EKYRP DD+V +E +S + F P++ GPPG GKTTT + ++
Sbjct: 7 LPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAIS 61
Score = 50.0 bits (114), Expect = 3e-05
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R +IK FA + P + K++ILDE+D+MT AQ ALRR M ++S RF L N
Sbjct: 88 RMRIKDFASSRSLFGP-KIKLIILDESDAMTGAAQAALRRIMEQFTSNVRFILICN 142
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 59.7 bits (138), Expect = 4e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
++PW+EKYRP+ D++ VS + +T N P++I GPPG GKT+ L +AR
Sbjct: 6 DVPWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMAR 62
Score = 44.0 bits (99), Expect = 0.002
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2
Query: 308 HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
+K++ILDEAD +T AQ ALRR + YSS +RF L N
Sbjct: 116 YKMIILDEADMITADAQAALRRVIENYSSISRFILICN 153
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 59.3 bits (137), Expect = 5e-08
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
W EKYRP+T DD+ G E+ + L +G PN++ GPPG GKTT+IL +A
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVA 58
Score = 48.8 bits (111), Expect = 7e-05
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R +K +A Q VT G +K++ILDE+D++T AQ ALRR M ++ TRF L N
Sbjct: 85 RTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICN 142
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 336
Score = 59.3 bits (137), Expect = 5e-08
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W E YRP+ DDI+G ++ V L F+ +G+ P+++I+GP G GKT + LA+
Sbjct: 3 WSEVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPHMLISGPHGTGKTAAVECLAK 56
Score = 38.7 bits (86), Expect = 0.074
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRF 406
K+++ ++A +T AQQALRRTM YS+T RF
Sbjct: 121 KLMVFEDAHGLTFEAQQALRRTMERYSATCRF 152
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 58.8 bits (136), Expect = 6e-08
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
PW+EKYRP+ D+ E+ V L +T + P+++ GPPG GKTTT L +A
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIA 63
Score = 52.8 bits (121), Expect = 4e-06
Identities = 25/37 (67%), Positives = 27/37 (72%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
KI+ILDEADSMT+ AQ ALRRTM YS TRF N
Sbjct: 117 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 153
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 58.8 bits (136), Expect = 6e-08
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG-NAPNIIIAGPPGVGKTTTILXLA 177
PW+EKYRP+T ++ ++ V L K G N P+ + GPPG GKTT+IL +A
Sbjct: 26 PWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVA 80
Score = 42.3 bits (95), Expect = 0.006
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 293 LPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
+PP K++ILDEAD++ AQ ALRR M +S TRF + N
Sbjct: 136 VPP--FKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCN 176
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 58.8 bits (136), Expect = 6e-08
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 165
WIEKYRP TFD I+G E L A T N P+++++GPPG GK+ +
Sbjct: 3 WIEKYRPVTFDQILGQERVCEVLRRCAATKNLPHLVVSGPPGTGKSAAV 51
Score = 34.7 bits (76), Expect = 1.2
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRF 406
K+++ ++A +++ Q ALRRTM YS+T RF
Sbjct: 121 KVMLFEDAHALSHDIQHALRRTMERYSNTCRF 152
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 58.0 bits (134), Expect = 1e-07
Identities = 22/59 (37%), Positives = 40/59 (67%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+ ++PWIEKYRP DD++ +++ ++ +F + ++II G PGVGKT+T+ +A+
Sbjct: 2 TNSIPWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAK 60
Score = 33.5 bits (73), Expect = 2.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 284 KVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYRDLQ 442
K + KI++LDEAD MT Q + + + T+F N+S + ++
Sbjct: 94 KKVFAANKSKIILLDEADIMTSKCQYDINNMIKKFGRKTKFIFTCNDSSKIIE 146
>UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replication
factor C subunit RFC5; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to replication factor
C subunit RFC5 - Strongylocentrotus purpuratus
Length = 292
Score = 57.2 bits (132), Expect = 2e-07
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+EKYRP + DD++ + + ++ + F K P+++ GPPG GKT+TIL +A+
Sbjct: 4 VEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAK 56
Score = 37.9 bits (84), Expect = 0.13
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 373
R I FA + G K+VILDEAD+MT+ AQ ALRR
Sbjct: 83 RGSILNFASTRTIFKSG-FKLVILDEADAMTNDAQNALRR 121
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 57.2 bits (132), Expect = 2e-07
Identities = 32/58 (55%), Positives = 38/58 (65%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
R KIK A+ + + P G KI+ LDEAD +T AQ ALRRTM +YS TTRF A N S
Sbjct: 84 RNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYS 140
Score = 52.4 bits (120), Expect = 6e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
W EKYRP++ +I G ++ + +L F + P+++ AG G GKT+T + LA
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALA 57
>UniRef50_O29072 Cluster: Replication factor C large subunit; n=1;
Archaeoglobus fulgidus|Rep: Replication factor C large
subunit - Archaeoglobus fulgidus
Length = 479
Score = 57.2 bits (132), Expect = 2e-07
Identities = 25/56 (44%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPNIIIAGPPGVGKTTTILXLA 177
W+EKYRP+T +++V ++ ++R+ +AK+ G+ P +++AGPPGVGKT+ L LA
Sbjct: 3 WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKP-LLLAGPPGVGKTSLALALA 57
>UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1;
uncultured archaeon GZfos31B6|Rep: Replication factor C
subunit - uncultured archaeon GZfos31B6
Length = 416
Score = 56.8 bits (131), Expect = 3e-07
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W EKYRP TF+DIVG+E V+ L ++ N P++++ G GK + + LAR
Sbjct: 77 WTEKYRPHTFEDIVGHEHIVANLKHLVESNNLPHLVLYGAKNTGKMSAVFVLAR 130
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 56.4 bits (130), Expect = 3e-07
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W EK+RP D+ GN+ + L F PN+I+ GPPG GKT++I+ +A+
Sbjct: 4 WTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAK 57
Score = 39.1 bits (87), Expect = 0.056
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K+VILDEAD +T AQ+ALR + S RF L N
Sbjct: 105 KLVILDEADGLTSCAQRALRHLIETTSGRARFCLCCN 141
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 56.4 bits (130), Expect = 3e-07
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
EKYRP + ++VGN + VS L + G PN++ GPPG GKTT+I +A
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIA 57
Score = 45.2 bits (102), Expect = 8e-04
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
K+VILDEAD M+ AQ ALRR + +S+ TRF L AN+
Sbjct: 95 KLVILDEADMMSRDAQNALRRIIEDFSANTRFCLIANH 132
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 56.4 bits (130), Expect = 3e-07
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
WIEKYRP +F++++G V +L+ +A GN P++++ G G GK++ + +R
Sbjct: 3 WIEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPHLLVIGRSGCGKSSALEVFSR 56
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 56.0 bits (129), Expect = 5e-07
Identities = 31/56 (55%), Positives = 37/56 (66%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R IK FAQ++V KI+ILDEADSMT AQQA+RR M ++SS RF L N
Sbjct: 81 RTTIKSFAQRRVK--DCEFKIIILDEADSMTTTAQQAMRRVMEIHSSECRFILICN 134
Score = 54.0 bits (124), Expect = 2e-06
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+ KY+P DIVGNE T+ +++ ++ + P+++ GPPG GKTT LAR
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILAR 57
>UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C large
subunit - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 492
Score = 56.0 bits (129), Expect = 5e-07
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPN-IIIAGPPGVGKTTTILXLARVS 186
W +KYRP+T D++VGN + + + K GN +++ GPPG+GKTT +AR
Sbjct: 3 WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAREF 62
Query: 187 SEYL 198
SEY+
Sbjct: 63 SEYI 66
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 55.2 bits (127), Expect = 8e-07
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
+PW+EKYRP T + +V +E ++ + + G P++I G PG GKTT I L
Sbjct: 2 IPWVEKYRPSTTEGVVSHELIIAAIRALIREGRLPHMIFYGKPGTGKTTLIKAL 55
Score = 35.5 bits (78), Expect = 0.69
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 305 RHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
+ KIVI+DE D M+ AQ +LRR M RF L N
Sbjct: 105 KFKIVIMDECDHMSSVAQASLRRLMETSIKHARFCLLCN 143
>UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida
albicans unknown function; n=1; Yarrowia lipolytica|Rep:
Similar to ca|CA5054|IPF3704 Candida albicans unknown
function - Yarrowia lipolytica (Candida lipolytica)
Length = 626
Score = 55.2 bits (127), Expect = 8e-07
Identities = 28/57 (49%), Positives = 34/57 (59%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVS 186
P E RPQT DDI G ++ ++ L F G P+II GPPGVGKTT LA+ S
Sbjct: 124 PLPELCRPQTLDDISGQKELMAVLRRFVAYGRIPSIIFWGPPGVGKTTLARILAKTS 180
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 55.2 bits (127), Expect = 8e-07
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = +2
Query: 278 QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAA 418
++K PP KI+ILDEADSMT AQ ALRRTM YS TRF L+A
Sbjct: 75 REKYPCPP--FKIIILDEADSMTQDAQSALRRTMERYSRITRFCLSA 119
Score = 33.9 bits (74), Expect = 2.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTTILXLAR 180
P+++ GPPG GKT+TIL LA+
Sbjct: 5 PHMLFYGPPGTGKTSTILALAK 26
>UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 566
Score = 54.8 bits (126), Expect = 1e-06
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSS 189
P+ E+ RPQT D+ VG D V+ L + + G P++I+ GPPG GKTT LA+ +S
Sbjct: 27 PFAERMRPQTLDEYVGQSDVVNGPLKMLLRQGKIPSMILWGPPGTGKTTLARLLAKSAS 85
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 54.4 bits (125), Expect = 1e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
++PWIEKYRP+ +DI +++ + K G + + GPPG GKT+ IL + R
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGR 62
Score = 48.4 bits (110), Expect = 9e-05
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +2
Query: 308 HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
+KI+ILDEADSMTD AQ ALR + YS+ TRF N
Sbjct: 113 YKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICN 150
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 53.6 bits (123), Expect = 2e-06
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W+EKYRP+ D+V ++ + + A+ G P+++ +G GVGKTTT L +AR
Sbjct: 2 WVEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIAR 56
Score = 45.6 bits (103), Expect = 6e-04
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
KI+ILDEAD MT AQ ALRRT+ S RF + ANN
Sbjct: 100 KIIILDEADEMTADAQTALRRTIEDASKICRFIIVANN 137
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 53.6 bits (123), Expect = 2e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
L W EKYRP+T DDI ++ V+ L + + P+++ GPPG GKT+ L R
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Score = 44.4 bits (100), Expect = 0.001
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
KI+ILDE D+MT AQ A+RR + +S TTRF L N
Sbjct: 120 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICN 156
>UniRef50_A2E9V5 Cluster: Differentiation specific element binding
protein, putative; n=1; Trichomonas vaginalis G3|Rep:
Differentiation specific element binding protein,
putative - Trichomonas vaginalis G3
Length = 694
Score = 53.2 bits (122), Expect = 3e-06
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
EKYRPQ +D++GN+D + + L F+K ++I+GPPG+GKT+T L LA+
Sbjct: 224 EKYRPQNRNDLIGNKDLIEKIDNWLITFSKQDKKA-VLISGPPGIGKTSTALLLAK 278
>UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 944
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN-IIIAGPPGVGKTTTILX 171
+T+LP EKYRP D++GNE + ++ + K+ G+ P +++GPPGVGKTTT
Sbjct: 428 NTSLPLCEKYRPIHLTDLIGNEANIRKVVDWLKSWSPGSLPACALLSGPPGVGKTTTAKI 487
Query: 172 LA 177
+A
Sbjct: 488 VA 489
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 51.2 bits (117), Expect = 1e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 153
PW+EKYRPQ+ D+ + D V + P++++ GPPG GK
Sbjct: 39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGK 84
Score = 33.1 bits (72), Expect = 3.7
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 10/48 (20%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRR----------TMXLYSSTTRFALAANN 424
K+V+LDEAD+MT AQ ALRR + ++ +TRFAL N+
Sbjct: 128 KMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNH 175
Score = 33.1 bits (72), Expect = 3.7
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 10/48 (20%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRR----------TMXLYSSTTRFALAANN 424
K+V+LDEAD+MT AQ ALRR + ++ +TRFAL N+
Sbjct: 218 KMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNH 265
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 51.2 bits (117), Expect = 1e-05
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 302 GRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
G K++ILDEAD+MT AQ ALRR M Y++ TRF + AN +++
Sbjct: 168 GAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHK 211
Score = 48.8 bits (111), Expect = 7e-05
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+EKYRP T +D V N + +F + P++++ GPPG GKT+TIL LAR
Sbjct: 74 VEKYRPNTLEDAVPNAPNIDWTNPLFVQ--RLPHLLLYGPPGTGKTSTILALAR 125
>UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C subunit -
Methanosarcina acetivorans
Length = 344
Score = 51.2 bits (117), Expect = 1e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W KYR +T + ++GNE V L+ ++G P++I GP GKTT L LAR
Sbjct: 8 WTLKYRAETLEGMLGNEHAVRTLSELLQSGTLPHLIFYGPENSGKTTASLALAR 61
Score = 42.3 bits (95), Expect = 0.006
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 308 HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
+KI+ +D A+S++ AQ ALRR M YSST RF L+
Sbjct: 131 YKIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILS 166
>UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6;
Methanococcales|Rep: Replication factor C large subunit
- Methanococcus jannaschii
Length = 516
Score = 51.2 bits (117), Expect = 1e-05
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN-IIIAGPPGVGKTTTILXLA 177
L W+EKYRP++ D+ G+E +L + ++ G P I++ GPPG GKTT LA
Sbjct: 2 LSWVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALA 60
>UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1;
Methanocorpusculum labreanum Z|Rep: Replication factor C
large subunit - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 476
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILXLAR 180
+ W EKYRP DI+GN V ++ +AKT + ++ G PG+GKT+ L LAR
Sbjct: 1 MDWAEKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRPLLFTGKPGIGKTSAALALAR 58
>UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep: Replication
factor C large subunit - Uncultured methanogenic
archaeon RC-I
Length = 553
Score = 50.4 bits (115), Expect = 2e-05
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT-GNAPN-IIIAGPPGVGKTTTILXLA 177
W EKYRP + DIVGN+ V L +A+T G +I+ G PGVGKT+ L LA
Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALA 64
>UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1;
Methanosaeta thermophila PT|Rep: Replication factor C
large subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 467
Score = 50.4 bits (115), Expect = 2e-05
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPNI---IIAGPPGVGKTTTILXLA 177
W EKYRP+ D I+GN VS L +A P + I+ GPPGVGKT+ L LA
Sbjct: 4 WAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALA 61
>UniRef50_P42425 Cluster: ATP-dependent protease La homolog; n=46;
Firmicutes|Rep: ATP-dependent protease La homolog -
Bacillus subtilis
Length = 552
Score = 50.4 bits (115), Expect = 2e-05
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKT 156
S + P EK RP++F DIVG ED + L N ++I+ GPPGVGKT
Sbjct: 54 SLSEPLSEKVRPKSFKDIVGQEDGIKALKAALCGPNPQHVIVYGPPGVGKT 104
>UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio
bacteriovorus|Rep: ATPase, AAA family - Bdellovibrio
bacteriovorus
Length = 449
Score = 50.0 bits (114), Expect = 3e-05
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
P E RP+T DDI G + T+ S+L + G P++II GPPG GKTT L L++
Sbjct: 27 PLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLPSLIIWGPPGTGKTTFALALSQ 84
>UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22;
Alphaproteobacteria|Rep: DNA polymerase III tau subunit
- Bradyrhizobium japonicum
Length = 613
Score = 49.6 bits (113), Expect = 4e-05
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILXLAR 180
KYRP +FDD++G E V ++ +TG P I+ G GVGKTTT LAR
Sbjct: 27 KYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILAR 78
>UniRef50_Q97FT8 Cluster: Lon-like ATP-dependent protease; n=1;
Clostridium acetobutylicum|Rep: Lon-like ATP-dependent
protease - Clostridium acetobutylicum
Length = 566
Score = 48.8 bits (111), Expect = 7e-05
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSS 189
++P E+ RP++FD+I+G ++ + L N ++II GPPGVGKT AR++
Sbjct: 54 SIPLCEESRPKSFDEIIGQKNGIKTLKASICGPNPQHVIIYGPPGVGKTAA----ARLAL 109
Query: 190 EY 195
EY
Sbjct: 110 EY 111
>UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit;
n=8; Alphaproteobacteria|Rep: Possible DNA polymerase
III tau subunit - Rhodopseudomonas palustris
Length = 623
Score = 48.8 bits (111), Expect = 7e-05
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILXLAR 180
KYRP +FDD++G E V ++ TG P I+ G GVGKTTT LAR
Sbjct: 33 KYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILAR 84
>UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2;
Methanomicrobiales|Rep: Replication factor C large
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 483
Score = 48.8 bits (111), Expect = 7e-05
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPNIIIAGPPGVGKTTTILXLA 177
+ W EKYRP+ +++VGN + + +++ +A T +P +I+ G PG+GKT++ LA
Sbjct: 1 MDWAEKYRPRHLNEMVGNREALHQMSEWATRWTVESPPLILYGKPGIGKTSSAWALA 57
>UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau
subunits; n=5; Alphaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Caulobacter crescentus
(Caulobacter vibrioides)
Length = 608
Score = 48.4 bits (110), Expect = 9e-05
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRP+TF+D++G E V LA TG A ++ G GVGKTTT LAR
Sbjct: 62 KYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLAR 113
>UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Replication
factor C large subunit - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 534
Score = 48.4 bits (110), Expect = 9e-05
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPN--IIIAGPPGVGKTTTILXLAR 180
+ W+EKY P+ D++GN +++ V+A + P +++ GPPG+GK TTI L
Sbjct: 1 MKWVEKYAPKKLGDVLGNAKAKAQIEVWANKWSKGVPQKPLLLMGPPGIGK-TTIAHL-- 57
Query: 181 VSSEYLSKT 207
V EY S+T
Sbjct: 58 VGKEYFSET 66
>UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1;
Methanopyrus kandleri|Rep: Replication factor C large
subunit - Methanopyrus kandleri
Length = 510
Score = 48.4 bits (110), Expect = 9e-05
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN---IIIAGPPGVGKTTTILXL 174
+PW+EKYRP++ ++V ++ LA +A G+ P +++ GPPG GKT+ L
Sbjct: 2 VPWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYAL 61
Query: 175 A 177
A
Sbjct: 62 A 62
>UniRef50_Q97CY0 Cluster: Lon-like ATP-dependent protease; n=8;
Clostridiales|Rep: Lon-like ATP-dependent protease -
Clostridium acetobutylicum
Length = 634
Score = 48.0 bits (109), Expect = 1e-04
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 34 RPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSEYLSKTPY 213
RPQTF +IVG E + L + +II+ GPPGVGKTT AR++ E + K Y
Sbjct: 168 RPQTFSEIVGQERAIKALVSKLASPYPQHIILYGPPGVGKTTA----ARIALEEVKKLKY 223
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 48.0 bits (109), Expect = 1e-04
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTG-NAPNIIIAGPPGVGKTTTILXLAR 180
W+EKYRP ++V + + L K + P+++ +G GVGKTTT L ++R
Sbjct: 7 WVEKYRPMKLSEVVNQTEIIGSLEALIKDPTDMPHLLFSGSAGVGKTTTALCISR 61
Score = 44.8 bits (101), Expect = 0.001
Identities = 26/57 (45%), Positives = 33/57 (57%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
R K+K F++ + KI+ILDEAD MT AQ ALRR + + RF L ANN
Sbjct: 87 REKVKKFSRY-AGMADVPFKIIILDEADEMTSDAQTALRRIIEDTAKICRFILIANN 142
>UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1;
Caldivirga maquilingensis IC-167|Rep: AAA ATPase,
central region - Caldivirga maquilingensis IC-167
Length = 418
Score = 48.0 bits (109), Expect = 1e-04
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN-IIIAGPPGVGKTTTILXLA 177
LPW EKYRP++ DIV E+ + + +G I+++GPPG GKTT + LA
Sbjct: 6 LPWFEKYRPRSLKDIVNQEEVKKTMEDWISKWLSGKEKRAILLSGPPGTGKTTMVHALA 64
>UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Parvularcula bermudensis HTCC2503|Rep: DNA
polymerase III subunits gamma and tau - Parvularcula
bermudensis HTCC2503
Length = 607
Score = 47.6 bits (108), Expect = 2e-04
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRPQ+FDD++G+E V L FA A I+ G GVGKTTT +AR
Sbjct: 20 KYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIAR 71
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 47.6 bits (108), Expect = 2e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTT 159
W+E+YRP++ DD + + F + G PN+++ G GVGKTT
Sbjct: 8 WVEQYRPKSVDDCILPTSIKNSFKAFVEQGEIPNLLLTGSAGVGKTT 54
Score = 38.3 bits (85), Expect = 0.097
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGR-HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R +++ FA V+L G HK+VI+DEAD+ T Q +LR + + RF N
Sbjct: 83 RNRVRQFATT-VSLTSGAPHKVVIIDEADNTTHDVQLSLRTAVEEFHGNCRFIFTCN 138
>UniRef50_P40151 Cluster: DNA-dependent ATPase MGS1; n=6;
Saccharomycetales|Rep: DNA-dependent ATPase MGS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 587
Score = 47.6 bits (108), Expect = 2e-04
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTIL 168
K ++LP EK RP+ D VG + +S+ L + K G P++I+ GPPGVGKT+
Sbjct: 129 KISHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLAR 188
Query: 169 XLARVSS 189
L + ++
Sbjct: 189 LLTKTAT 195
>UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 140 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 718
Score = 47.2 bits (107), Expect = 2e-04
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APN---IIIAGPPGVGKTT 159
S + W EKYRPQT D++GN++ +++ + P+ +++AG PGVGKTT
Sbjct: 241 SNEIIWTEKYRPQTKSDLIGNKNQIAKFYTWINKWEKVIPDRRAVLLAGAPGVGKTT 297
>UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1;
Methanoculleus marisnigri JR1|Rep: Replication factor C
large subunit - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 454
Score = 47.2 bits (107), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILXLA 177
+ W+EKYRPQ D+VGN V + +A+ + +I+ G PG GKT++ LA
Sbjct: 1 MDWVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALA 57
>UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau;
n=14; Bacteroidetes|Rep: DNA polymerase III subunit
gamma/tau - Gramella forsetii (strain KT0803)
Length = 653
Score = 46.8 bits (106), Expect = 3e-04
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLARVSSEYLSK 204
KYRPQTF D+VG + + LA + A ++ GP GVGKTT LA++ ++ ++
Sbjct: 10 KYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILAKMINQKETQ 69
Query: 205 TP 210
P
Sbjct: 70 DP 71
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 46.8 bits (106), Expect = 3e-04
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 165
PW EK+RP D I+ + V ++GN P++++ GP G GKTT I
Sbjct: 4 PWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLI 53
Score = 42.7 bits (96), Expect = 0.005
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 284 KVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K P +++ILDEAD++T +Q ALRR + +S TTRF + N
Sbjct: 104 KAVYPCPDFQVIILDEADALTRESQAALRRIIEDFSETTRFCIICN 149
>UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1;
Dictyostelium discoideum AX4|Rep: Replication factor C
subunit - Dictyostelium discoideum AX4
Length = 1401
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APN-------IIIAGPPGVGK 153
K ++ W+EKYRP+ +DIVGN + N AP ++++GPPG+GK
Sbjct: 845 KGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGK 904
Query: 154 TTTILXLAR 180
T+ L + +
Sbjct: 905 TSAALLICK 913
>UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1;
Encephalitozoon cuniculi|Rep: DNA REPLICATION FACTOR C
SUBUNIT - Encephalitozoon cuniculi
Length = 568
Score = 46.8 bits (106), Expect = 3e-04
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAK-TGNAPNIIIAGPPGVGKTTT 162
W EKYRP D+IVGN+ V +L + + ++++G PG+GKTTT
Sbjct: 113 WSEKYRPSKRDEIVGNQGIVKQLEDYLQGRTKYKAVLLSGQPGIGKTTT 161
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 46.8 bits (106), Expect = 3e-04
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
WIEKYRP++FD+++G E+ L + P++I+ G G GK T +L L
Sbjct: 3 WIEKYRPRSFDEMIGREEASGLLKSYT-LETIPHMIVHGRSGHGKKTVLLCL 53
Score = 35.9 bits (79), Expect = 0.52
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
K+V++ A+ +T AQ ALRRT+ +YS R L N R
Sbjct: 130 KLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSR 170
>UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4;
Pyrobaculum|Rep: Replication factor C large subunit -
Pyrobaculum aerophilum
Length = 422
Score = 46.8 bits (106), Expect = 3e-04
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVF--------------------AKTGNAPNIIIA 132
LPWIEKYRP++F +IV E+ LA + + A I++A
Sbjct: 3 LPWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILLA 62
Query: 133 GPPGVGKTTTILXLAR 180
GPPGVGKTT + LAR
Sbjct: 63 GPPGVGKTTLVHALAR 78
>UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n=4;
Prochlorococcus marinus|Rep: DNA polymerase III
gamma/tau subunit - Prochlorococcus marinus
Length = 559
Score = 46.4 bits (105), Expect = 4e-04
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILXLARV 183
T P +KYRP+ FDD+VG + V+ L AP + GP G GKT++ LAR
Sbjct: 4 TYQPLHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARS 63
Query: 184 SSEYLSKTP 210
+ S+ P
Sbjct: 64 LNCQQSEKP 72
>UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3;
Bacteria|Rep: AAA ATPase, central region -
Thermoanaerobacter ethanolicus ATCC 33223
Length = 443
Score = 46.4 bits (105), Expect = 4e-04
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
N P ++ RP+T D+ VG E + + L + N ++I+ GPPGVGKTT + +A
Sbjct: 16 NKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN 75
Query: 181 VSS 189
+++
Sbjct: 76 MTN 78
>UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; Cyanobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
CC9311)
Length = 643
Score = 46.0 bits (104), Expect = 5e-04
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
P KYRPQ FD +VG E + L +G AP + +GP G GKT++ LAR
Sbjct: 7 PLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILAR 62
>UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Hyphomonas neptunium ATCC 15444|Rep: DNA
polymerase III, subunits gamma and tau - Hyphomonas
neptunium (strain ATCC 15444)
Length = 578
Score = 46.0 bits (104), Expect = 5e-04
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRP+ F+D++G E V L+ +TG A ++ G GVGKTTT LAR
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLAR 86
>UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C large
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 610
Score = 46.0 bits (104), Expect = 5e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPN---IIIAGPPGVGKTTTILXLA 177
+ W EKYRP+T D+VGN V L +A+ P +I+ GP G+GKT++ LA
Sbjct: 10 IEWAEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALA 69
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 45.6 bits (103), Expect = 6e-04
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
P KYRPQTF D+VG E + L+ A AP + GP G GKT++ LA+
Sbjct: 12 PLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAK 67
>UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4;
Desulfovibrionaceae|Rep: AAA ATPase, central domain
protein - Desulfovibrio vulgaris subsp. vulgaris (strain
DP4)
Length = 411
Score = 45.6 bits (103), Expect = 6e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARV 183
S P E+ RP + VG R+ + P++++ GPPG GK+T L LA+
Sbjct: 2 SVRQPLPERLRPTVLEGFVGQTHLTQRIEALLRANRLPSLLLFGPPGCGKSTLALLLAKA 61
Query: 184 SS 189
S
Sbjct: 62 RS 63
>UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5;
Sulfolobaceae|Rep: Replication factor C large subunit -
Sulfolobus tokodaii
Length = 440
Score = 45.6 bits (103), Expect = 6e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG--NAPN---IIIAGPPGVGKTTTILXLA 177
L W KYRP+T +++ ED L + ++ PN +++ GPPGVGKTT LA
Sbjct: 3 LQWFLKYRPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALA 62
Query: 178 R 180
R
Sbjct: 63 R 63
>UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory
receptor Olr396, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to olfactory receptor
Olr396, partial - Ornithorhynchus anatinus
Length = 208
Score = 45.2 bits (102), Expect = 8e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 34 RPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
RP+ D++ E+ V+ L + + PN++ GPPG GKT+TIL AR
Sbjct: 117 RPKRVDEVAYQEEVVAVLRRSLEGADLPNLLFYGPPGTGKTSTILAAAR 165
>UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RAD17
(hRad17) (RF-C/activator 1 homolog).; n=1; Bos
taurus|Rep: Cell cycle checkpoint protein RAD17 (hRad17)
(RF-C/activator 1 homolog). - Bos Taurus
Length = 611
Score = 45.2 bits (102), Expect = 8e-04
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG---NAPN-----IIIAGPPGVGKTT 159
S N PW++KY+P+T ++ ++ + + + K P ++I GPPG GKTT
Sbjct: 86 SENEPWVDKYKPETQHELAVHKKKIEEVETWLKAEVLERQPKQGGSILLITGPPGCGKTT 145
Query: 160 TILXLAR 180
TI LA+
Sbjct: 146 TIKILAK 152
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 45.2 bits (102), Expect = 8e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
+ EKYRP+ D + N D + +L A + P+III+GP G GK T + L
Sbjct: 3 FFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFL 54
Score = 37.9 bits (84), Expect = 0.13
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 263 IKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
IK +A K + + K +++ +++ + +Q ALRRTM Y+ T RF + NN
Sbjct: 109 IKQYAMHKSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNN 165
>UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1;
Aeropyrum pernix|Rep: Replication factor C large subunit
- Aeropyrum pernix
Length = 479
Score = 45.2 bits (102), Expect = 8e-04
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTT 162
+S+ +PW+ KYRP+ +D+V + L + K G P+ ++ GPPGVGKT+
Sbjct: 6 RSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSL 65
Query: 163 ILXLA 177
+ +A
Sbjct: 66 VEAIA 70
>UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6;
Rhizobiales|Rep: DNA polymerase III subunit tau -
Bartonella henselae (Rochalimaea henselae)
Length = 646
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRPQ F D++G E V L +TG A ++ G GVGKTTT LAR
Sbjct: 16 KYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILAR 67
>UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Rhodospirillales|Rep: DNA polymerase III subunit
gamma/tau - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 652
Score = 44.8 bits (101), Expect = 0.001
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRPQTFDD++G + V L F A ++ G GVGKTTT +AR
Sbjct: 44 KYRPQTFDDLIGQDSLVRILRRAFELKRVAHAFMLTGVRGVGKTTTARIIAR 95
>UniRef50_Q1QXX6 Cluster: AAA ATPase, central region; n=1;
Chromohalobacter salexigens DSM 3043|Rep: AAA ATPase,
central region - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 469
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
N P + RP+ DD VG E V L A++G ++I+ GPPGVGKTT LA
Sbjct: 36 NTPLAYRMRPRRLDDYVGQEALVGPGKPLRRMAESGAVRSMILWGPPGVGKTTLADILAD 95
Query: 181 VSSEYLSK 204
S L +
Sbjct: 96 ASGAMLER 103
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 44.8 bits (101), Expect = 0.001
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
+YRPQTF DIVG V L +T A + AGP GVGKT+T L++
Sbjct: 9 RYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSK 60
>UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837,
putative; n=6; Plasmodium|Rep: Drosophila melanogaster
BcDNA.LD06837, putative - Plasmodium yoelii yoelii
Length = 363
Score = 44.8 bits (101), Expect = 0.001
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 165
W+EKY P++ D++ ++D +RL + + P+II G PG GK+T I
Sbjct: 16 WLEKYAPRSLDELNIHKDITTRLKKLSVHNDLPHIIFYGSPGGGKSTRI 64
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
W EKYRP++ D G E + L + G+ PN+++ GPPG GKTT LA
Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNSSGRGH-PNLLLYGPPGTGKTTFAHLLA 54
Score = 36.7 bits (81), Expect = 0.30
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R KIK++A TL G+ K VILDE +++T AQ LRR + S TRF N
Sbjct: 72 REKIKVYAS---TL--GKDKTVILDECENLTSDAQHCLRRVIE-DSVNTRFIFITN 121
>UniRef50_Q8R5R3 Cluster: Uncharacterized ATPase related to the
helicase subunit of the Holliday junction resolvase;
n=2; Bacteria|Rep: Uncharacterized ATPase related to the
helicase subunit of the Holliday junction resolvase -
Thermoanaerobacter tengcongensis
Length = 440
Score = 44.4 bits (100), Expect = 0.001
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
N P ++ RP+T D+ VG E + + L + + ++I+ GPPGVGKTT + +A
Sbjct: 15 NRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIAN 74
Query: 181 VSS 189
+++
Sbjct: 75 MTN 77
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
KYRPQTF+D++G + ++ K PN + G G+GKTTT +A+
Sbjct: 11 KYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAK 62
>UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Janibacter sp. HTCC2649|Rep: DNA polymerase III
subunits gamma and tau - Janibacter sp. HTCC2649
Length = 799
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLARVSSEYLSK 204
+YRP+TF D++G E L +TG + + +GP G GKTT+ LAR +
Sbjct: 11 RYRPETFVDVIGQEHVTEPLMQALRTGRVNHAYLFSGPRGCGKTTSARILARCLNCEQGP 70
Query: 205 TP 210
TP
Sbjct: 71 TP 72
>UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Leptospirillum sp. Group II UBA|Rep:
Putative DNA polymerase III, gamma/tau subunits -
Leptospirillum sp. Group II UBA
Length = 540
Score = 44.4 bits (100), Expect = 0.001
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
ST L K+RPQ F D+VG E V L +G P ++ +G GVGKTT LA+
Sbjct: 2 STILSLARKWRPQLFSDLVGQEFVVRALTGTLGSGKLPQALLFSGDRGVGKTTVARILAK 61
>UniRef50_Q17P00 Cluster: Werner helicase interacting protein; n=2;
Endopterygota|Rep: Werner helicase interacting protein -
Aedes aegypti (Yellowfever mosquito)
Length = 560
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTT 159
+ +N+P EK RP D +G E + + L + P++I+ GPPG GKTT
Sbjct: 132 EGSNIPLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEKNTIPSMILWGPPGCGKTT 187
>UniRef50_Q2TVY2 Cluster: Checkpoint RAD17-RFC complex; n=2;
Aspergillus|Rep: Checkpoint RAD17-RFC complex -
Aspergillus oryzae
Length = 843
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLA-----VFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
LPW ++Y P D++V ++ VS + FA TG +++ GP G GKTTTI L+
Sbjct: 209 LPWAQQYSPTNLDELVVHKRKVSDVQSWLRNAFAGTGEHKLLVLRGPAGSGKTTTINILS 268
Query: 178 R 180
+
Sbjct: 269 Q 269
>UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III,
gamma/tau subunits; n=1; Brevibacterium linens BL2|Rep:
COG2812: DNA polymerase III, gamma/tau subunits -
Brevibacterium linens BL2
Length = 1148
Score = 44.0 bits (99), Expect = 0.002
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLARVSSEYLSK 204
+YRP+TFD+++G E L + G + + +GP G GKTT+ LAR +
Sbjct: 8 RYRPETFDEVIGQEHVTDPLKAAIERGRINHAYLFSGPRGCGKTTSARILARCLNCAKGP 67
Query: 205 TP 210
TP
Sbjct: 68 TP 69
>UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Synechococcus|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 779
Score = 44.0 bits (99), Expect = 0.002
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRPQ F D+VG V LA + G AP + GP G GKT++ LA+
Sbjct: 13 KYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAK 64
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 44.0 bits (99), Expect = 0.002
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRPQ F ++ G + V L+ KTG A + GP GVGKTTT +A+
Sbjct: 9 KYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAK 60
>UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candida
albicans; n=1; Debaryomyces hansenii|Rep: Similarities
with CA0979|IPF19713 Candida albicans - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 842
Score = 44.0 bits (99), Expect = 0.002
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
N+P E RP++ ++++G ++ + F + G P++I+ GPPGVGKT+ LA
Sbjct: 155 NIPLFEVIRPKSLNEVIGQTHLINNHNGTIKNFIRLGYLPSMILHGPPGVGKTSIASILA 214
Query: 178 R 180
+
Sbjct: 215 Q 215
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 44.0 bits (99), Expect = 0.002
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 275 AQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
+QQ T K+V+L E D +T AQ ALRRTM Y ST R L N++
Sbjct: 118 SQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNST 168
Score = 43.2 bits (97), Expect = 0.003
Identities = 16/54 (29%), Positives = 33/54 (61%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W++KYRP + + +++ ++L + G+ P++++ GP G GK T I+ + R
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILR 57
>UniRef50_UPI0000DB7733 Cluster: PREDICTED: similar to Werner
helicase interacting protein isoform 1; n=1; Apis
mellifera|Rep: PREDICTED: similar to Werner helicase
interacting protein isoform 1 - Apis mellifera
Length = 433
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPNIIIAGPPGVGKTTTILXLARVSSE 192
EK RP F D +G E V + + G+ P++I GPPG GKT+ ++++S E
Sbjct: 17 EKMRPACFHDYIGQEKVVGSNTILQQLLTKGHIPSMIFWGPPGCGKTSLTNIISKISKE 75
>UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Arthrospira platensis|Rep: DNA polymerase III gamma
and tau subunits - Spirulina platensis
Length = 768
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
P KYRPQTF D+VG E L ++ AP + GP G GKT++ LA+
Sbjct: 5 PLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIAPAYLFTGPRGTGKTSSARILAK 60
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K+RPQTFDD+VG + V L A+ A + GP G GKT+T A+
Sbjct: 12 KWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAK 63
>UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis
thaliana|Rep: F3I6.23 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 525
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVF---AKTGNAPNIIIAGPPGVGKTTTILXLARVS 186
P E+ RP+T DD+VG + +S ++ ++ P+I+ GPPG GKT+ L S
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 187 SE 192
+
Sbjct: 162 KD 163
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2
Query: 302 GRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYRDL 439
G K VILDEAD++T AQ+ALR + YS RF L N + + L
Sbjct: 101 GNPKAVILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKIL 146
Score = 35.1 bits (77), Expect = 0.91
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIII-AGPPGVGKTT 159
+ L W +KYRPQ+ D V E PN+++ + PG GKTT
Sbjct: 7 ANELLWEQKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTT 59
>UniRef50_Q0C7D8 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 816
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-----IIIAGPPGVGKTTTILXLA 177
LPW ++Y PQ D++ ++ V+ + + K A N +++ GP G GKTTT+ LA
Sbjct: 188 LPWTQRYPPQDLDELAVHKKKVADVNAWLKDALAGNSRRRLLVLRGPAGSGKTTTVSLLA 247
Query: 178 R 180
+
Sbjct: 248 K 248
>UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in
DNA replication; n=2; Thermoprotei|Rep: Replication
factor C/ATPase involved in DNA replication -
Cenarchaeum symbiosum
Length = 386
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPNIIIAGPPGVGKTT 159
W EK+RP+ +VGNE+ + L+ + K G P +++ GPPG GKTT
Sbjct: 3 WSEKHRPRDIPSMVGNEEARAALSGWFSKWKKGTKP-VLLVGPPGTGKTT 51
>UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5;
Halobacteriaceae|Rep: Replication factor C large subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 508
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPNIIIAGPPGVGKTTTILXLA 177
+ W EKYRP T ++ GN+ L +A+T + +I+ G PG+GKT+ LA
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALA 57
>UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2;
Ascomycota|Rep: Replication factor C subunit 5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 358
Score = 43.6 bits (98), Expect = 0.003
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W+++YRP+T + ++ RL + T P++++ GP G GK T ++ + R
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILR 56
Score = 41.9 bits (94), Expect = 0.008
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYRDLQ 442
K+V+++ AD +T AQ ALRRTM YS+ R L AN++ + ++
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIE 172
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 43.2 bits (97), Expect = 0.003
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
K+RPQ+F D+VG L+ K G P+ ++ GP G GKT++ LA+
Sbjct: 25 KWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAK 76
>UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21;
Bacteria|Rep: ATP/GTP-binding domain protein -
Symbiobacterium thermophilum
Length = 438
Score = 43.2 bits (97), Expect = 0.003
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
P + RPQT D+ VG E V L + G+ P+ I+ GPPG GKTT +A
Sbjct: 17 PLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGPPGTGKTTLARLMA 73
>UniRef50_Q0SS35 Cluster: ATPase, AAA family; n=3; Clostridium|Rep:
ATPase, AAA family - Clostridium perfringens (strain
SM101 / Type A)
Length = 415
Score = 43.2 bits (97), Expect = 0.003
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVS 186
P + RP+ +DIVG + V L+ K N N I GPPGVGKTT LA +
Sbjct: 3 PLADIMRPKKLEDIVGQKHIVGEGTPLSNLIKNKNMINCIFYGPPGVGKTT----LANII 58
Query: 187 SEYLSKTPY 213
S Y K Y
Sbjct: 59 SNYTDKKFY 67
>UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Maricaulis maris MCS10|Rep: DNA polymerase
III, subunits gamma and tau - Maricaulis maris (strain
MCS10)
Length = 606
Score = 43.2 bits (97), Expect = 0.003
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRP TF+D++G + V L FA A ++ G GVGKTTT +AR
Sbjct: 38 KYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIAR 89
>UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22;
Epsilonproteobacteria|Rep: ATPase, AAA family -
Sulfurovum sp. (strain NBC37-1)
Length = 393
Score = 43.2 bits (97), Expect = 0.003
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNA---PNIIIAGPPGVGKTTTILXLARVSSEYL 198
KYRP+T D++VG + A K A P+I + GPPG GKTT LAR+ + L
Sbjct: 7 KYRPKTLDEMVGQRHLLGEEAPLRKLIEADALPHIFLYGPPGCGKTT----LARIIATQL 62
Query: 199 SKTPY 213
+ Y
Sbjct: 63 GRPFY 67
>UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1;
Methylobacterium sp. 4-46|Rep: DNA-directed DNA
polymerase - Methylobacterium sp. 4-46
Length = 699
Score = 43.2 bits (97), Expect = 0.003
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTT 159
W EKYRP+ F D+VG + V+ + +++ GP G GKTT
Sbjct: 10 WDEKYRPRVFGDLVGQDGAVAWCKERVRERQVKTLLLHGPSGCGKTT 56
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 43.2 bits (97), Expect = 0.003
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLA 177
PW KYRPQ+ +D+ G + L + P ++++GP G GKT+T +A
Sbjct: 12 PWHLKYRPQSINDLTGQDSVQKVLTRLIAEDSVPQALLLSGPKGTGKTSTARIIA 66
Score = 32.3 bits (70), Expect = 6.4
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 305 RHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYRDLQ 442
R ++ I+DEA +++ AQ A +T+ ++ T+F LA ++ L+
Sbjct: 126 RTRVFIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLE 171
>UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 996
Score = 43.2 bits (97), Expect = 0.003
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTT 159
++ L W +KYRP+T + + + +L T P+II GPPG GK++
Sbjct: 681 ENIRLFWADKYRPRTLGGFTCHREQIEQLKQLVSTEFCPHIIFKGPPGSGKSS 733
>UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
5, putative - Leishmania major
Length = 351
Score = 43.2 bits (97), Expect = 0.003
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +2
Query: 308 HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
+K+V+L+E D M+ AQ ALRRTM Y +T R L N++ R
Sbjct: 132 YKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSR 173
Score = 38.3 bits (85), Expect = 0.097
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
W+++YRP+T D+ + L +K + P+++ GP G GK T + +
Sbjct: 3 WVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAM 54
>UniRef50_Q5AF80 Cluster: Putative uncharacterized protein RAD24;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD24 - Candida albicans (Yeast)
Length = 589
Score = 43.2 bits (97), Expect = 0.003
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTV-----SRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 168
+ N WI+KYRP+T +I N + S + + KT N ++++GP G K+TT+
Sbjct: 51 NNNQQWIDKYRPKTTSEICINPTKLKQVKESMMKMINKTSNTRVLVLSGPSGSSKSTTVK 110
Query: 169 XLA 177
LA
Sbjct: 111 LLA 113
>UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Replication factor C
large subunit - Thermofilum pendens (strain Hrk 5)
Length = 413
Score = 43.2 bits (97), Expect = 0.003
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPN---IIIAGPPGVGKTTTILXLA 177
+PW EKYRP D+VGNE+ + + + P+ ++ GPPG GKT+ + A
Sbjct: 9 VPWTEKYRPARIADVVGNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKTSIVHATA 68
Query: 178 R 180
+
Sbjct: 69 K 69
>UniRef50_O75943 Cluster: Cell cycle checkpoint protein RAD17; n=34;
Euteleostomi|Rep: Cell cycle checkpoint protein RAD17 -
Homo sapiens (Human)
Length = 681
Score = 43.2 bits (97), Expect = 0.003
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG---NAPN-----IIIAGPPGVGKTT 159
S N PW++KY+P+T ++ ++ + + + K P ++I GPPG GKTT
Sbjct: 86 SENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTT 145
Query: 160 TILXLAR 180
T+ L++
Sbjct: 146 TLKILSK 152
>UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: AAA family ATPase - Entamoeba
histolytica HM-1:IMSS
Length = 611
Score = 42.7 bits (96), Expect = 0.005
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVF---AKTGNAPNIIIAGPPGVGKTT 159
K +P EK RP+ +DI+G ED ++ F K + I+ GPPG GKTT
Sbjct: 39 KQIYIPLAEKQRPKNLEDIIGQEDILAIGTPFNTMIKNDKIQSTILYGPPGCGKTT 94
>UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2;
cellular organisms|Rep: DNA polymerase III subunit gamma
- Propionibacterium acnes
Length = 957
Score = 42.7 bits (96), Expect = 0.005
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILXLARVSSEYLS 201
+YRP+TFD+++G ED V A N N + +GP G GKTTT LAR +
Sbjct: 113 RYRPETFDEVIG-EDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQG 171
Query: 202 KTP 210
TP
Sbjct: 172 PTP 174
>UniRef50_Q59Y48 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 547
Score = 42.7 bits (96), Expect = 0.005
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRL--AV--FAKTGNAPNIIIAGPPGVGKTT 159
K T+L E RP TF+ VG + ++ + A+ F K G P++I GP G+GKTT
Sbjct: 20 KLTSLSLSEAIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPSMIFTGPSGIGKTT 76
>UniRef50_Q2U8Q6 Cluster: ATPase related to the helicase subunit of
the Holliday junction resolvase; n=2; Aspergillus|Rep:
ATPase related to the helicase subunit of the Holliday
junction resolvase - Aspergillus oryzae
Length = 518
Score = 42.7 bits (96), Expect = 0.005
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILX 171
K N P E+ RP +FDDIVG + + F PN+I G G GKTT
Sbjct: 108 KPDNAPLAERVRPGSFDDIVGQNHLIGPNGTIRQFVHEDKIPNMIFWGSSGTGKTTIARI 167
Query: 172 LARVS 186
+ VS
Sbjct: 168 IGDVS 172
>UniRef50_Q58812 Cluster: Putative protease La homolog; n=1;
Methanocaldococcus jannaschii|Rep: Putative protease La
homolog - Methanococcus jannaschii
Length = 649
Score = 42.7 bits (96), Expect = 0.005
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +1
Query: 37 PQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSEYLSKTPY 213
P+ D ++G E+ V V + N N+I+ G PGVGK+ + + + S++ TPY
Sbjct: 17 PRLIDQVIGQEEAVK--IVLSAVKNKRNVILLGDPGVGKSMIVKAVGEILSDFGEFTPY 73
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 42.3 bits (95), Expect = 0.006
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFA--KTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRP+TF ++V N+D V + + A K A I AGP G GKTT LA+
Sbjct: 7 KYRPKTFSEVV-NQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAK 58
>UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Trichodesmium erythraeum IMS101|Rep: DNA
polymerase III, subunits gamma and tau - Trichodesmium
erythraeum (strain IMS101)
Length = 695
Score = 42.3 bits (95), Expect = 0.006
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
P KYRPQTF D+VG + L T AP + GP G GKT++ LA+
Sbjct: 5 PLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAK 60
>UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 346
Score = 42.3 bits (95), Expect = 0.006
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
WI+++RP DD+ + L + + + P+++ GPPG GK T +L R
Sbjct: 5 WIDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLR 58
Score = 37.5 bits (83), Expect = 0.17
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
K+V+++EA ++ AQQALRRTM Y+ + R L A++
Sbjct: 127 KVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADS 164
>UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: AAA ATPase,
central domain protein - Halorubrum lacusprofundi ATCC
49239
Length = 540
Score = 42.3 bits (95), Expect = 0.006
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILXLA 177
W EKYRP T ++ GN+ A +A++ + + +++ G PGVGKT+ LA
Sbjct: 44 WTEKYRPSTLSEVRGNDKARDAFADWARSWDDHHEAVVLHGSPGVGKTSAAHALA 98
>UniRef50_UPI00015B6046 Cluster: PREDICTED: similar to werner
helicase interacting protein; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to werner helicase
interacting protein - Nasonia vitripennis
Length = 462
Score = 41.9 bits (94), Expect = 0.008
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILX 171
K ++ P EK RP D VG + + L + G P++I+ GPPG GKT+ +
Sbjct: 63 KKSHAPLAEKMRPNELSDYVGQSHLIGPKTLLHDLLRNGEIPSMILWGPPGCGKTSLVNV 122
Query: 172 LARVSSEYLSKTP 210
+ + S+ LS P
Sbjct: 123 IMQ-ESKKLSDIP 134
>UniRef50_UPI0000E4A039 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 672
Score = 41.9 bits (94), Expect = 0.008
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPNIIIAGPPGVGKTTTILXLAR 180
P E+ RP T D ++G + + GN P++I GPPG GKT+ +AR
Sbjct: 271 PLAERMRPYTMDTLIGQNKALGATGTLRRLLDVGNIPSMIFWGPPGCGKTSLANVIAR 328
>UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Gloeobacter violaceus|Rep: DNA polymerase III gamma
and tau subunits - Gloeobacter violaceus
Length = 632
Score = 41.9 bits (94), Expect = 0.008
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLARVSSE 192
P KYRPQ F D+VG V+ L K G A + G G GKTTT +A+ +
Sbjct: 5 PLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNC 64
Query: 193 YLSKTP 210
TP
Sbjct: 65 IHGPTP 70
>UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Flavobacteriales|Rep: DNA polymerase III subunit
gamma/tau - Robiginitalea biformata HTCC2501
Length = 631
Score = 41.9 bits (94), Expect = 0.008
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNED-TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSE 192
KYRPQ F+D+VG + T + L A ++ GP GVGKTT LA+ +E
Sbjct: 21 KYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKINE 76
>UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium novyi
NT|Rep: ATPase, AAA family - Clostridium novyi (strain
NT)
Length = 419
Score = 41.9 bits (94), Expect = 0.008
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
+ N P E+ RP+ ++ G + + + L +T N +II+ GPPGVGKTT +
Sbjct: 12 NVNKPLAERMRPRNLNEFFGQKHIIGKGKLLRRLIETDNLTSIILYGPPGVGKTTLAYII 71
Query: 175 A-RVSSEYL 198
+ SE++
Sbjct: 72 SLETKSEFV 80
>UniRef50_A5DW03 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 839
Score = 41.9 bits (94), Expect = 0.008
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA---PNIIIAGPPGVGKTTTILXLARVS 186
P + RP+T DD +G E V A A P+ ++ GPPG GKTT +A+ S
Sbjct: 182 PLAHRVRPKTLDDFIGQEKLVGENAPLRNLIQADLIPSFLLWGPPGCGKTTIARIIAK-S 240
Query: 187 SEY 195
++Y
Sbjct: 241 TDY 243
>UniRef50_UPI00015BB275 Cluster: replication factor C large subunit;
n=1; Ignicoccus hospitalis KIN4/I|Rep: replication
factor C large subunit - Ignicoccus hospitalis KIN4/I
Length = 476
Score = 41.5 bits (93), Expect = 0.010
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN---IIIAGPPGVGKTTTI 165
+PWI KYRP+ +D++ E L + K +G P ++ GPPGVGKT+ +
Sbjct: 4 VPWIIKYRPKRVEDVIDQEKAKEVLIPWIKKWLSGTPPEKRAALLWGPPGVGKTSLV 60
>UniRef50_Q5UQK9 Cluster: Putative uncharacterized protein; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Putative
uncharacterized protein - Mimivirus
Length = 533
Score = 41.5 bits (93), Expect = 0.010
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSR----LAVFAKTG---NAPNIIIAGPPGVGKT 156
W++KY+P + I+G+++ ++R L+ F K N PN+I+ G GVGKT
Sbjct: 40 WLDKYKPTSSSQILGDKNNINRIKAFLSQFTKENAEINCPNLILTGNNGVGKT 92
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 41.5 bits (93), Expect = 0.010
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
+P KYRP+ F ++VG E + L +T AP + GP G GKT++ LA+
Sbjct: 4 VPLHHKYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAK 60
>UniRef50_Q67J53 Cluster: Lon-like ATP-dependent protease; n=14;
Firmicutes|Rep: Lon-like ATP-dependent protease -
Symbiobacterium thermophilum
Length = 659
Score = 41.5 bits (93), Expect = 0.010
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KS + E RP+ +++VG + + L + ++I+ GPPGVGK TT+ L
Sbjct: 173 KSLHRSAAELLRPRALEEVVGQDRAIQALLAKVASPFPQHVILYGPPGVGK-TTVARLVL 231
Query: 181 VSSEYLSKTPY 213
++ + TP+
Sbjct: 232 EKAKTMPHTPF 242
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 41.5 bits (93), Expect = 0.010
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
+P+ KYRP+ F +++G E V L K A + AGP GVGKTT LA+
Sbjct: 4 VPFARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAK 60
>UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1;
Chlorobium phaeobacteroides BS1|Rep: DNA-directed DNA
polymerase - Chlorobium phaeobacteroides BS1
Length = 613
Score = 41.5 bits (93), Expect = 0.010
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRP TF +VG + S L K + A + GP GVGKTT LA+
Sbjct: 10 KYRPMTFKQVVGQQSITSTLQNAIKNNHLAQAFLFTGPRGVGKTTCARILAK 61
>UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Kineococcus radiotolerans SRS30216|Rep: DNA
polymerase III, subunits gamma and tau - Kineococcus
radiotolerans SRS30216
Length = 712
Score = 41.5 bits (93), Expect = 0.010
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLARVSSEYLSK 204
+YRP+TF+ ++G E + L G + + +GP G GKTT+ LAR +
Sbjct: 8 RYRPETFEQVIGQEHVTAPLMQALSKGRVTHAYLFSGPRGCGKTTSARILARCLNCAQGP 67
Query: 205 TP 210
TP
Sbjct: 68 TP 69
>UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Roseiflexus|Rep: DNA polymerase III, subunits
gamma and tau - Roseiflexus sp. RS-1
Length = 599
Score = 41.5 bits (93), Expect = 0.010
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+YR QTFD+++G E V L A+ A + GP GVGKTT LA+
Sbjct: 9 RYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAK 60
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 41.5 bits (93), Expect = 0.010
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
R KIK+F + + + K+V++DEAD ++ +Q+ALRR + +S ++RF L N R
Sbjct: 70 RNKIKIFCRSSIQSK--KLKVVVIDEADLLSVISQEALRRIIEKFSLSSRFILICNYPTR 127
Query: 434 DLQ 442
++
Sbjct: 128 IIE 130
>UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and tau;
n=27; Bacteria|Rep: DNA polymerase III subunits gamma
and tau - Silicibacter sp. (strain TM1040)
Length = 608
Score = 41.1 bits (92), Expect = 0.014
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRP+TF D+VG + V L FA A I+ G G GKTTT +A+
Sbjct: 23 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAK 74
>UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 967
Score = 41.1 bits (92), Expect = 0.014
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
+YRP TFD ++G E L + + + +GP G GKTT+ LAR
Sbjct: 8 RYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILAR 59
>UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Sphingomonas wittichii RW1|Rep: DNA polymerase
III, subunits gamma and tau - Sphingomonas wittichii RW1
Length = 582
Score = 41.1 bits (92), Expect = 0.014
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRPQ F++++G + V+ LA + G A ++ G GVGKT+T +A+
Sbjct: 14 KYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAK 65
>UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 825
Score = 41.1 bits (92), Expect = 0.014
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
KYRP TFD +VG + VS L G + + GP G GKTT LA+
Sbjct: 7 KYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAK 58
>UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III
subunit gamma/tau - Microscilla marina ATCC 23134
Length = 575
Score = 41.1 bits (92), Expect = 0.014
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRP TFD +VG + L K+ A + GP GVGKTT LA+
Sbjct: 10 KYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAK 61
>UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Salinispora|Rep: DNA polymerase III, subunits
gamma and tau - Salinispora arenicola CNS205
Length = 888
Score = 41.1 bits (92), Expect = 0.014
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
KYRP+TF +I+G E L+ ++G + + +GP G GKT++ LAR
Sbjct: 62 KYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILAR 113
>UniRef50_Q0UVB4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 852
Score = 41.1 bits (92), Expect = 0.014
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLA-----VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW EKY P + +++ ++ VS + VF+ G +++ GP G GKTTT+ LA+
Sbjct: 194 PWTEKYGPASLEELAVHKKKVSDVRTWLEDVFSGRGRKRLLLLKGPAGSGKTTTMSLLAK 253
>UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4;
Thermotogaceae|Rep: UPF0189 protein TM_0508 - Thermotoga
maritima
Length = 599
Score = 41.1 bits (92), Expect = 0.014
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPNIIIAGPPGVGKTTTILXLARVS 186
P E RP+ F+D VG + + KTGN + I+ GPPG GKT+ L R
Sbjct: 7 PLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFSLLKRYF 66
Query: 187 S---EYLSKT 207
+ YLS T
Sbjct: 67 NGEVVYLSST 76
>UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12;
Saccharomycetales|Rep: Replication factor C subunit 5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 354
Score = 41.1 bits (92), Expect = 0.014
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 305 RHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
R+K VI++EA+S+T AQ ALRRTM YS R + ++
Sbjct: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS 173
Score = 38.3 bits (85), Expect = 0.097
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
W++KYRP++ + + NE+ + L ++ + + P++++ GP G GK T + L
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMAL 56
>UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Cyanobacteria|Rep: DNA polymerase III gamma and tau
subunits - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 603
Score = 40.7 bits (91), Expect = 0.018
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
P KYRPQ F D+VG + L K AP + GP G GKT++ LA+
Sbjct: 5 PLHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAK 60
>UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau
subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep:
Putative DNA polymerase III, gamma/tau subunit -
Neorickettsia sennetsu (strain Miyayama)
Length = 396
Score = 40.7 bits (91), Expect = 0.018
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTT 162
KYRP+ D+IVG + V L A A+ A I+++GP G GKTTT
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTT 54
>UniRef50_Q8SQU0 Cluster: HSP 101 RELATED PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: HSP 101 RELATED PROTEIN -
Encephalitozoon cuniculi
Length = 851
Score = 40.7 bits (91), Expect = 0.018
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARV 183
+E+ R FD ++G ++ + R+ N I+ G PGVGKT + +A++
Sbjct: 158 VEQARQNVFDPVIGRDEEIRRVLEILSKKTKSNAILVGKPGVGKTAIVNGIAQL 211
>UniRef50_Q6FYP6 Cluster: Holliday junction ATP-dependent DNA
helicase ruvB; n=305; root|Rep: Holliday junction
ATP-dependent DNA helicase ruvB - Bartonella quintana
(Rochalimaea quintana)
Length = 361
Score = 40.7 bits (91), Expect = 0.018
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 34 RPQTFDDIVGNEDTVSRLAVFAKTGNA-----PNIIIAGPPGVGKTTTILXLAR 180
RPQ DD +G E + L +F + A +++ GPPG+GKTT +A+
Sbjct: 21 RPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAK 74
>UniRef50_UPI0000DAE674 Cluster: hypothetical protein
Rgryl_01000912; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000912 - Rickettsiella
grylli
Length = 523
Score = 40.3 bits (90), Expect = 0.024
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLARVSSEYLSK 204
KYRPQ+FD+++G E T L +T + + G GVGKTT LA+ +
Sbjct: 9 KYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAKCLNCQTQI 68
Query: 205 TP 210
TP
Sbjct: 69 TP 70
>UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2;
Deltaproteobacteria|Rep: ATPase, AAA family - Geobacter
sulfurreducens
Length = 440
Score = 40.3 bits (90), Expect = 0.024
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
N P E+ RP+T D+ VG E + L ++ ++I GPPG GKTT +A
Sbjct: 15 NAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIAN 74
Query: 181 VSSEY 195
+ +
Sbjct: 75 ATKSH 79
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 40.3 bits (90), Expect = 0.024
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K+RP+TF +IVG E V L A A + +GP G GKTTT LA+
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAK 59
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 40.3 bits (90), Expect = 0.024
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILXLAR 180
KYRP+ F DIVG E L K + I AGP G GKTTT LA+
Sbjct: 7 KYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAK 58
>UniRef50_A6G1D5 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 361
Score = 40.3 bits (90), Expect = 0.024
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 34 RPQTFDDIVGNEDTVSRLAVF---AKTGNAP--NIIIAGPPGVGKTTTILXLARVSSEYL 198
RP++FD+ VG +++L V+ AK + P ++++ GPPG+GKTT +A L
Sbjct: 31 RPRSFDEYVGQRALITKLRVYVQAAKQRDEPLDHVLLHGPPGLGKTTLAQIVAHEMGVVL 90
Query: 199 SKT 207
T
Sbjct: 91 HTT 93
>UniRef50_A6CF37 Cluster: Holliday junction DNA helicase B; n=1;
Planctomyces maris DSM 8797|Rep: Holliday junction DNA
helicase B - Planctomyces maris DSM 8797
Length = 393
Score = 40.3 bits (90), Expect = 0.024
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 34 RPQTFDDIVGNEDTVSRLAVF---AKTGNAP--NIIIAGPPGVGKTTTILXLAR 180
RPQ ++VG V RL VF + N P ++++ GPPG+GKTT L R
Sbjct: 77 RPQRLSEVVGQRAVVERLEVFLDATRKRNEPLGHLLLDGPPGLGKTTLASVLPR 130
>UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase
III, subunits gamma and tau - Magnetococcus sp. (strain
MC-1)
Length = 605
Score = 40.3 bits (90), Expect = 0.024
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLA 177
K+RP+ F+D++G E TV L + G P+ + G G+GKTT LA
Sbjct: 13 KWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLA 63
>UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n=3;
Ostreococcus|Rep: Replication factor C 110 kDa subunit -
Ostreococcus tauri
Length = 553
Score = 40.3 bits (90), Expect = 0.024
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLA------------VFAKTGNAPNIIIAGPPGVGKTTT 162
W +++ P+T D+VGN ++ L V K + I+I+GPPGVGKTTT
Sbjct: 66 WTDEFSPRTVTDLVGNSSAINVLRSWLLQWSARKFNVQLKGQDRKCILISGPPGVGKTTT 125
Query: 163 ILXLAR 180
+ L +
Sbjct: 126 AVLLCK 131
>UniRef50_Q6XM61 Cluster: FirrV-1-A26; n=1; Feldmannia irregularis
virus a|Rep: FirrV-1-A26 - Feldmannia irregularis virus
a
Length = 306
Score = 39.9 bits (89), Expect = 0.032
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
S +L W ++ RP D+VG + V L + + G P +++ G PGVGKTT + +A
Sbjct: 29 SASLLWADRIRPTCAADLVG--EGVETLVRWFRDGERP-LLLTGAPGVGKTTAVRVVA 83
>UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subunits;
n=2; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 429
Score = 39.9 bits (89), Expect = 0.032
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRPQ +++G E V L A AP + +GP G GKT+T +A+
Sbjct: 8 KYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAK 59
>UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits;
n=5; Mycoplasma hyopneumoniae|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma hyopneumoniae (strain
232)
Length = 726
Score = 39.9 bits (89), Expect = 0.032
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTT 159
+ + KYRP+ F DIVG + + L K+GN + + +GP G GKTT
Sbjct: 13 IAFYRKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTT 62
>UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subunit;
n=1; Mycoplasma synoviae 53|Rep: DNA polymerase III
gamma and tau subunit - Mycoplasma synoviae (strain 53)
Length = 609
Score = 39.9 bits (89), Expect = 0.032
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRPQ F +I+G + + L V + A + AGP G GKT+T A+
Sbjct: 9 KYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAK 60
>UniRef50_P73507 Cluster: DNA polymerase III subunit; n=1;
Synechocystis sp. PCC 6803|Rep: DNA polymerase III
subunit - Synechocystis sp. (strain PCC 6803)
Length = 1116
Score = 39.9 bits (89), Expect = 0.032
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
P KYRPQTF D+VG + L+ + P + GP G GKT++ LA+
Sbjct: 5 PLHHKYRPQTFADLVGQTAIAATLSNAIEQERIVPAYLFTGPRGTGKTSSARILAK 60
>UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subunit;
n=3; Thermus thermophilus|Rep: DNA polymerase III
holoenzyme tau subunit - Thermus thermophilus
Length = 529
Score = 39.9 bits (89), Expect = 0.032
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLA 177
++RP TF ++VG E L + G A + +GP GVGKTTT LA
Sbjct: 7 RFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLA 57
>UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Sulfurovum sp. NBC37-1|Rep: DNA polymerase III,
gamma/tau subunits - Sulfurovum sp. (strain NBC37-1)
Length = 666
Score = 39.9 bits (89), Expect = 0.032
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APNIIIAGPPGVGKTTTILXLAR 180
+L KYRP TFDD++G +D+VS+ A GN + + +G G GKT+T A+
Sbjct: 2 SLALARKYRPATFDDLIG-QDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAK 59
>UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Caldicellulosiruptor saccharolyticus DSM
8903|Rep: DNA polymerase III, subunits gamma and tau -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 535
Score = 39.9 bits (89), Expect = 0.032
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILXLAR 180
KYRP+ F+D+V E L K + I GP G GKTTT +AR
Sbjct: 8 KYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMAR 59
>UniRef50_A4M640 Cluster: AAA ATPase, central domain protein; n=1;
Petrotoga mobilis SJ95|Rep: AAA ATPase, central domain
protein - Petrotoga mobilis SJ95
Length = 411
Score = 39.9 bits (89), Expect = 0.032
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSEY 195
P E RP+ D+++GNE L + K + II G PG GK+T + L +Y
Sbjct: 6 PLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKVRSFIIYGEPGSGKSTIVRALINEIKDY 65
>UniRef50_Q9C587 Cluster: Replication factor C large subunit-like
protein; n=7; Magnoliophyta|Rep: Replication factor C
large subunit-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 956
Score = 39.9 bits (89), Expect = 0.032
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 20/72 (27%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVSRL--------AVFAKTGNAPN------------II 126
T+LPW EKYRP+ ++IVGN+ V++L F TG+ ++
Sbjct: 338 TSLPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVL 397
Query: 127 IAGPPGVGKTTT 162
++G PG+GKTT+
Sbjct: 398 LSGTPGIGKTTS 409
>UniRef50_Q7S356 Cluster: Putative uncharacterized protein
NCU09159.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09159.1 - Neurospora crassa
Length = 994
Score = 39.9 bits (89), Expect = 0.032
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
W+E Y FD+ + E ++ +V + +++GPPG GKT T++ +A
Sbjct: 367 WLEHYDSTRFDESLNYEQRIAVDSVLCQNYGTMPYLVSGPPGTGKTKTMIEIA 419
>UniRef50_A3LTW2 Cluster: Replication factor ATPase; n=1; Pichia
stipitis|Rep: Replication factor ATPase - Pichia
stipitis (Yeast)
Length = 786
Score = 39.9 bits (89), Expect = 0.032
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVS----RLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
+LP E RP++ D+ +G + + + F + P++++ GPPGVGKTT +A
Sbjct: 20 SLPLAEAIRPRSLDEYIGQKHLIDPDNGAITNFMRLRYLPSMLLYGPPGVGKTTMASIIA 79
>UniRef50_A5YSV5 Cluster: Replication factor C small subunit II;
n=4; Halobacteriaceae|Rep: Replication factor C small
subunit II - uncultured haloarchaeon
Length = 375
Score = 39.9 bits (89), Expect = 0.032
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 251 RRXKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
+R I Q+ + P G +K V+LD A+++ + QQALRR M Y T+F +A
Sbjct: 117 KRDMISHVMQELASYQPASGTYKTVLLDNAETIREDFQQALRRVMERYHKNTQFIIA 173
Score = 31.9 bits (69), Expect = 8.5
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 165
WIE++ P + + RL T N+II GPPGVGKT +
Sbjct: 7 WIERHAPALTE--LPQASARDRLTQI--TDEPMNLIIQGPPGVGKTAAV 51
>UniRef50_Q8KC00 Cluster: Holliday junction ATP-dependent DNA
helicase ruvB; n=16; Bacteria|Rep: Holliday junction
ATP-dependent DNA helicase ruvB - Chlorobium tepidum
Length = 344
Score = 39.9 bits (89), Expect = 0.032
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFA----KTGNA-PNIIIAGPPGVGKTT 159
+T + E+ RPQ D G + + L VF K G A +++++GPPG+GKTT
Sbjct: 12 ATEARFEEQIRPQKMGDFAGQKKLIDNLKVFITAARKRGEALDHVLLSGPPGLGKTT 68
>UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau;
n=10; Actinomycetales|Rep: DNA polymerase III subunit
gamma/tau - Mycobacterium bovis
Length = 578
Score = 39.9 bits (89), Expect = 0.032
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
KYRP +F ++VG E + L+V G + + +GP G GKT++ LAR
Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILAR 57
>UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Corynebacterium diphtheriae|Rep: DNA polymerase III
subunit gamma/tau - Corynebacterium diphtheriae
Length = 707
Score = 39.5 bits (88), Expect = 0.042
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
KYRP +F ++VG E L+V +G + + +GP G GKT++ +AR
Sbjct: 6 KYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMAR 57
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 39.5 bits (88), Expect = 0.042
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLA 177
K ++ KYRP +F ++ G + V L + K + A + +GP GVGKTT +A
Sbjct: 5 KKMHITLYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIA 64
Query: 178 R 180
+
Sbjct: 65 K 65
>UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Rubrobacter xylanophilus DSM 9941|Rep: DNA
polymerase III, subunits gamma and tau - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 567
Score = 39.5 bits (88), Expect = 0.042
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLA 177
++RP+TF +I G E V L +TG A + +GP G GKT+T LA
Sbjct: 9 RWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLA 59
>UniRef50_A5WC21 Cluster: AAA ATPase, central domain protein; n=3;
Psychrobacter|Rep: AAA ATPase, central domain protein -
Psychrobacter sp. PRwf-1
Length = 439
Score = 39.5 bits (88), Expect = 0.042
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAV---FAKTGNAPNIIIAGPPGVGKTTTILXLA 177
++P ++ RP+ D+++G ++ A F + G+ P++I+ G G+GKTT + LA
Sbjct: 12 DIPLAQRLRPKRLDEVIGQTHLLAPGAPIQRFVEHGHLPSLILHGEAGIGKTTIAMLLA 70
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 39.5 bits (88), Expect = 0.042
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLARV 183
KYRP+ FD+I+G V K + I +GP G GKTTT LA+V
Sbjct: 8 KYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKV 60
>UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Rhodobacterales bacterium HTCC2150|Rep: DNA
polymerase III subunits gamma and tau - Rhodobacterales
bacterium HTCC2150
Length = 596
Score = 39.5 bits (88), Expect = 0.042
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRP+TF D+VG + V L FA A ++ G G GKT+T +A+
Sbjct: 15 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVLTGIRGTGKTSTARIIAK 66
>UniRef50_A0Q7R7 Cluster: AAA family-ATPase; n=11; Francisella
tularensis|Rep: AAA family-ATPase - Francisella
tularensis subsp. novicida (strain U112)
Length = 412
Score = 39.5 bits (88), Expect = 0.042
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNA-PNIIIAGPPGVGKTTTILXLA 177
+P + RPQ+ D+IVG E +S+ + K G+ ++++ G PGVGKT+ +A
Sbjct: 4 IPLAARIRPQSIDEIVGQEHLLSQHGILTKILAGDGICSLVLCGKPGVGKTSLARIIA 61
>UniRef50_Q4MZF5 Cluster: Replication factor C large subunit,
putative; n=1; Theileria parva|Rep: Replication factor C
large subunit, putative - Theileria parva
Length = 1084
Score = 39.5 bits (88), Expect = 0.042
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNI---IIAGPPGVGKTT 159
EKYRP+ F +++GN ++ R L F K +++GPPG+GKTT
Sbjct: 504 EKYRPKRFSELIGNPRSIQRLKDWLQHFPKDKGKDEFKAALLSGPPGIGKTT 555
>UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 335
Score = 39.5 bits (88), Expect = 0.042
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 302 GRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALA 415
G +K ++LD A+ M + QQALRR M Y T+F +A
Sbjct: 120 GSYKTILLDNAEGMREDFQQALRRVMEQYYEATQFVIA 157
>UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2;
Desulfurococcales|Rep: Replication factor C large
subunit - Hyperthermus butylicus (strain DSM 5456 / JCM
9403)
Length = 484
Score = 39.5 bits (88), Expect = 0.042
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTI 165
S LPWI KYRP+ +D+V E+ + ++ G P + GP GVGKT+ +
Sbjct: 2 SDKLPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSLV 61
>UniRef50_A7TRM5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 757
Score = 31.9 bits (69), Expect(2) = 0.045
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRL 87
S N W+EK++P F +VGNE T R+
Sbjct: 99 SDNSLWVEKWKPTKFIHLVGNEHTNRRI 126
Score = 26.6 bits (56), Expect(2) = 0.045
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 94 FAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
F + N ++I GPPG+GKT+ +A+
Sbjct: 165 FFQRPNKKILLIHGPPGIGKTSISHIIAK 193
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 39.1 bits (87), Expect = 0.056
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
++RP+TF ++VG E L +TG + + GP G GKT+T LAR
Sbjct: 10 QWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILAR 61
>UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III
subunit gamma/tau - Syntrophus aciditrophicus (strain
SB)
Length = 588
Score = 39.1 bits (87), Expect = 0.056
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
K+RPQ F+D+VG + V L + A + +GP GVGKT+ LA+
Sbjct: 9 KWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAK 60
>UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; Sphingomonadales|Rep: DNA polymerase III,
subunits gamma and tau - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 565
Score = 39.1 bits (87), Expect = 0.056
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
KYRPQTF +++G + V L A+ A ++ G GVGKT+T +A+
Sbjct: 35 KYRPQTFAELIGQDAMVKTLGNAIARDRLAHAFLMTGVRGVGKTSTARLIAK 86
>UniRef50_A6DEF7 Cluster: ENDOPEPTIDASE CLP ATP-BINDING CHAIN A;
n=1; Caminibacter mediatlanticus TB-2|Rep: ENDOPEPTIDASE
CLP ATP-BINDING CHAIN A - Caminibacter mediatlanticus
TB-2
Length = 730
Score = 39.1 bits (87), Expect = 0.056
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
FDD++G E ++R+ N I+ G PGVGKT + LA+
Sbjct: 172 FDDVIGREKEINRVMQVLARRKKNNPILVGEPGVGKTAVVEGLAK 216
>UniRef50_A5V6U8 Cluster: AAA ATPase, central domain protein; n=1;
Sphingomonas wittichii RW1|Rep: AAA ATPase, central
domain protein - Sphingomonas wittichii RW1
Length = 444
Score = 39.1 bits (87), Expect = 0.056
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA---PNIIIAGPPGVGKTTTILXLA 177
P E+ RP +D+VG E A A+ A +II GPPG+GKTT LA
Sbjct: 22 PLAERLRPTRIEDVVGQEHLTGPDAPLARMVAARRLSSIIFWGPPGIGKTTLARLLA 78
>UniRef50_A4EPD3 Cluster: ATPase; n=2; Rhodobacteraceae|Rep: ATPase
- Roseobacter sp. SK209-2-6
Length = 437
Score = 39.1 bits (87), Expect = 0.056
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPNIIIAGPPGVGKTTTILXLAR 180
N P RP++ D++VG + ++ +V + +I++ GPPGVGKT+ +AR
Sbjct: 13 NQPLAAALRPRSLDEVVGQKTLTAKGSVLRRRIAANQLGSIVLYGPPGVGKTS----IAR 68
Query: 181 VSSEYLSK 204
E L+K
Sbjct: 69 AVGEMLNK 76
>UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3;
Campylobacter|Rep: ATPase, AAA family - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 397
Score = 39.1 bits (87), Expect = 0.056
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 31 YRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+RP +D+VG +D V + F K+ P+ + G G GKTT +A+
Sbjct: 7 FRPNNINDMVGQKDIVELFSKFIKSKKIPHSLFFGATGCGKTTMAKIIAK 56
>UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis
thaliana|Rep: F14L17.24 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1071
Score = 39.1 bits (87), Expect = 0.056
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILXLA 177
+KY+P FD+++G V L K G ++ + GP G GKT+T L+
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILS 477
>UniRef50_Q4P8X9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 950
Score = 39.1 bits (87), Expect = 0.056
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVSRLAV------------FAKTG-NAPN----IIIAG 135
+N+ W KY P D+VGN+ V +LA F K G N ++I+G
Sbjct: 381 SNMLWTTKYAPTQMKDLVGNKAAVEKLASWLKAWPDSYRSNFKKPGPTGMNVYRAVLISG 440
Query: 136 PPGVGKTTTILXLARV 183
PPG+GKTT+ +A++
Sbjct: 441 PPGIGKTTSAHLVAKM 456
>UniRef50_A5DKE6 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 572
Score = 39.1 bits (87), Expect = 0.056
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
N P E RP + +G + + F + G P++I+ GPPGVGKTT +A
Sbjct: 83 NRPLTELVRPSSLHQYIGQNHLTNHRNGAITNFIRLGYLPSMILHGPPGVGKTTLASIIA 142
Query: 178 R 180
+
Sbjct: 143 K 143
>UniRef50_A3LXJ6 Cluster: DNA-dependent ATPase MGS1 (Maintenance of
genome stability protein 1) DNA-directed DNA polymerase
ATPase; n=4; Saccharomycetales|Rep: DNA-dependent ATPase
MGS1 (Maintenance of genome stability protein 1)
DNA-directed DNA polymerase ATPase - Pichia stipitis
(Yeast)
Length = 747
Score = 39.1 bits (87), Expect = 0.056
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI---IIAGPPGVGKTTTILX 171
+ ++P + RP++ DD G E + + + NA NI I+ G PGVGKT+
Sbjct: 174 REASIPLAHRLRPKSLDDFFGQEKLLGQDGILRNIINADNIPSFILWGVPGVGKTSLARI 233
Query: 172 LARVSS 189
+A ++
Sbjct: 234 IAHTTN 239
>UniRef50_Q96S55 Cluster: ATPase WRNIP1; n=31; Eumetazoa|Rep: ATPase
WRNIP1 - Homo sapiens (Human)
Length = 665
Score = 39.1 bits (87), Expect = 0.056
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVS 186
P + RP T D G V + L +T P++I+ GPPG GKTT +A S
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 187 SEY 195
++
Sbjct: 286 KKH 288
>UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC
2.7.7.7) [Contains: DNA polymerase III subunit gamma];
n=39; Enterobacteriaceae|Rep: DNA polymerase III subunit
tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit
gamma] - Salmonella typhimurium
Length = 642
Score = 39.1 bits (87), Expect = 0.056
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
K+RPQTF D+VG E ++ LA G + + +G GVGKT+ LA+
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
>UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4;
Leptospira|Rep: DNA polymerase III subunit gamma -
Leptospira interrogans
Length = 503
Score = 38.7 bits (86), Expect = 0.074
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
KYRPQ F D++ + + L K+G + I GP GVGKTT LA+
Sbjct: 35 KYRPQKFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 86
>UniRef50_Q896F9 Cluster: ATPase associated with chromosome
architecture/replication; n=11; Bacteria|Rep: ATPase
associated with chromosome architecture/replication -
Clostridium tetani
Length = 427
Score = 38.7 bits (86), Expect = 0.074
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAP---NIIIAGPPGVGKTTTILXLARVS 186
P +K RP+ D++ G + + + + + N+ N+I GPPG GKTT +A +
Sbjct: 5 PLADKIRPKILDEVFGQKHILGQGKILRRIINSEKLTNMIFYGPPGTGKTTVANIIANRT 64
Query: 187 SEYLSK 204
++ L K
Sbjct: 65 NKTLYK 70
>UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1;
Pectobacterium atrosepticum|Rep: DNA polymerase III
subunit tau - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 691
Score = 38.7 bits (86), Expect = 0.074
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
K+RPQTF +VG E ++ LA G + + +G GVGKTT LA+
Sbjct: 9 KWRPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK 60
>UniRef50_Q2J818 Cluster: AAA ATPase, central region; n=5;
Actinomycetales|Rep: AAA ATPase, central region -
Frankia sp. (strain CcI3)
Length = 519
Score = 38.7 bits (86), Expect = 0.074
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVS 186
P + RP+T D++VG + S L + G ++++ GPPG GKTT ++R +
Sbjct: 52 PLAARLRPRTLDEVVGQRHLLGPGSPLRRLVEGGATTSVVLWGPPGTGKTTLAHIVSRAT 111
>UniRef50_Q28US4 Cluster: AAA ATPase protein; n=11;
Proteobacteria|Rep: AAA ATPase protein - Jannaschia sp.
(strain CCS1)
Length = 436
Score = 38.7 bits (86), Expect = 0.074
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
P ++ RP T D ++G + L V +G ++I GPPGVGKTT LA
Sbjct: 20 PLADRLRPATLDAVIGQGHLLGSEGSLRVMLDSGALSSLIFWGPPGVGKTTIARLLA 76
>UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit of
the holliday junction resolvase; n=8; Bacteria|Rep:
ATPase related to the helicase subunit of the holliday
junction resolvase - Flavobacteria bacterium BBFL7
Length = 431
Score = 38.7 bits (86), Expect = 0.074
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPNIIIAGPPGVGKTTTILXLAR 180
N P E+ RPQ + + V + G P++I+ GPPG GKTT +A+
Sbjct: 3 NSPLAERIRPQNLSEYLSQNHLVGERGTLRQHILNGTIPSLILWGPPGTGKTTLANIIAQ 62
Query: 181 VS 186
S
Sbjct: 63 ES 64
>UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12;
Corynebacterineae|Rep: DNA polymerase III subunit -
Rhodococcus sp. (strain RHA1)
Length = 753
Score = 38.7 bits (86), Expect = 0.074
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
KYRP +F ++VG E L+ G + + +GP G GKT++ LAR
Sbjct: 6 KYRPASFSEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILAR 57
>UniRef50_A1A0Y3 Cluster: Putative uncharacterized protein; n=2;
Bifidobacterium adolescentis|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
(strain ATCC 15703 / DSM 20083)
Length = 466
Score = 38.7 bits (86), Expect = 0.074
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVS------RLAVFAKTGN--APN-IIIAGPPGVGKTTTIL 168
P + RP + DD+VG + RLA A G+ AP+ II+ GPPGVGKTT
Sbjct: 18 PLAVRMRPASIDDVVGQSRVLGEGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAY 77
Query: 169 XLARVS 186
+A+ S
Sbjct: 78 IVAKQS 83
>UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1;
Enterobacteria phage RB43|Rep: Gp44 clamp-loader subunit
- Enterobacteria phage RB43
Length = 332
Score = 38.7 bits (86), Expect = 0.074
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILXL-ARVSSE 192
W ++YRP T D+ + + F K+G N+ +++ PG GKTT L L A V +E
Sbjct: 26 WDQRYRPTTIDECILPAADKEIMRGFIKSGRIDNMTLVSDSPGTGKTTLALVLGAEVDAE 85
Query: 193 YL 198
+
Sbjct: 86 VM 87
>UniRef50_Q6AGY6 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Actinobacteria (class)|Rep: DNA polymerase III,
gamma and tau subunit - Leifsonia xyli subsp. xyli
Length = 789
Score = 38.3 bits (85), Expect = 0.097
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
+YRP TF +++G L +T + + +GP G GKTT+ LAR
Sbjct: 10 RYRPDTFAEMIGQSQVTDPLTTALRTNRVNHAYLFSGPRGCGKTTSARILAR 61
>UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2;
Anaplasma|Rep: DNA polymerase III gamma subunit -
Anaplasma marginale (strain St. Maries)
Length = 474
Score = 38.3 bits (85), Expect = 0.097
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTT 159
KYRP++FDD+VG + V L G+ + I++ G GVGKTT
Sbjct: 6 KYRPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTT 50
>UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Desulfuromonadales|Rep: DNA polymerase III,
subunits gamma and tau - Desulfuromonas acetoxidans DSM
684
Length = 597
Score = 38.3 bits (85), Expect = 0.097
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLAR 180
K+RPQTF D+VG E LA +G + + G GVGKT+ LA+
Sbjct: 9 KWRPQTFADLVGQEHVSRTLANAIASGRVHHAFLFTGARGVGKTSAARILAK 60
>UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma
subunits; n=1; Pedobacter sp. BAL39|Rep: DNA polymerase
III, tau and gamma subunits - Pedobacter sp. BAL39
Length = 624
Score = 38.3 bits (85), Expect = 0.097
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
KYRP TF+ +VG + L + A + GP GVGKTT LA+
Sbjct: 10 KYRPATFETVVGQQHITGTLKNAIRNNQLAQAFLFCGPRGVGKTTCARILAK 61
>UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Desulfovibrio|Rep: DNA polymerase III,
subunits gamma and tau - Desulfovibrio vulgaris subsp.
vulgaris (strain DP4)
Length = 622
Score = 38.3 bits (85), Expect = 0.097
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILXLAR 180
+YRPQTF ++ G E + L+ A+ AP + +G GVGKTT A+
Sbjct: 9 RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,724,579
Number of Sequences: 1657284
Number of extensions: 7452141
Number of successful extensions: 33005
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 31288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32787
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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