Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30337
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 98 8e-22
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 69 4e-13
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 60 2e-10
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 44 2e-05
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 38 9e-04
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 34 0.011
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 34 0.014
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 32 0.043
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 31 0.13
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 30 0.17
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.23
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 29 0.30
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.40
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.69
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 28 0.92
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 1.6
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 26 2.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 3.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 3.7
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 3.7
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 4.9
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 25 4.9
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 6.5
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 6.5
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 8.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 8.5
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 25 8.5
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.5
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 25 8.5
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 8.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.5
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 97.9 bits (233), Expect = 8e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
R +IK FAQ+KV LPPGRHKI+ILDEADSMT GAQQALRRTM +YS+TTRFALA N S +
Sbjct: 102 RNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNK 161
Query: 434 DLQ 442
++
Sbjct: 162 IIE 164
Score = 86.2 bits (204), Expect = 2e-18
Identities = 36/55 (65%), Positives = 45/55 (81%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
LPW+EKYRP DDIVGNE+T+ RL V AK GN P+++I+G PG+GKTT+IL LA
Sbjct: 21 LPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLA 75
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 180 SLLGVSFKDAVLXLNASXDRGIDVVGIR*KCLRNKRLL 293
+LLG ++K+ VL LNAS +RGIDVV R K K+++
Sbjct: 77 ALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVI 114
Score = 32.7 bits (71), Expect = 0.032
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +3
Query: 426 VIEICNKENLSYTEEGVSAVVFTAQG 503
++ IC E ++YT++G++A++ TA+G
Sbjct: 187 LLNICKAEKVNYTDDGLAALIMTAEG 212
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 68.9 bits (161), Expect = 4e-13
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+ LPW+EKYRP +D+V ++D +S L F + P+++ GPPG GKT+TIL AR
Sbjct: 21 STLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACAR 78
Score = 45.2 bits (102), Expect = 6e-06
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R +IK FA + K++ILDEAD+MT AQ ALRR + Y+ RF + N
Sbjct: 104 REQIKNFASTRQIFA-STFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICN 158
Score = 28.7 bits (61), Expect = 0.52
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 183 LLGVSFKDAVLXLNASXDRGIDVV 254
+ G ++++ ++ LNAS DRGID V
Sbjct: 80 IYGPNYRNQLMELNASDDRGIDAV 103
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 59.7 bits (138), Expect = 2e-10
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
++PW+E YRP+T D + E TV L + N P+++ G PG GKT+TIL L+R
Sbjct: 18 SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSR 74
Score = 56.8 bits (131), Expect = 2e-09
Identities = 33/61 (54%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = +2
Query: 254 RXKIKMFAQQKVT-----LPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAA 418
R K+K FA+ VT P KI+ILDEADSMT AQ ALRRTM Y+ TRF L
Sbjct: 101 REKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLIC 160
Query: 419 N 421
N
Sbjct: 161 N 161
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 201 KDAVLXLNASXDRGIDVV 254
K VL LNAS +RGI ++
Sbjct: 83 KSRVLELNASDERGISII 100
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 43.6 bits (98), Expect = 2e-05
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W+++YRP+T + ++ RL + T P++++ GP G GK T ++ + R
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILR 56
Score = 41.9 bits (94), Expect = 5e-05
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYRDLQ 442
K+V+++ AD +T AQ ALRRTM YS+ R L AN++ + ++
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIE 172
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 37.9 bits (84), Expect = 9e-04
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILXLAR 180
W EKY PQ D+ ++ +S + + T + + ++I GP G GK+T + LA+
Sbjct: 72 WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAK 127
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 34.3 bits (75), Expect = 0.011
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
E R D ++G ED + R N ++ G PGVGKT+ LAR
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLAR 224
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 33.9 bits (74), Expect = 0.014
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 17/72 (23%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAK--------TGNAPN---------IIIAGPPGV 147
W KY P + DI GN+ V +L + + N P ++++GPPG+
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420
Query: 148 GKTTTILXLARV 183
GKTT +A++
Sbjct: 421 GKTTAAHLVAKL 432
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 32.3 bits (70), Expect = 0.043
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 88 AVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
A++A + N +I GPPG GKT TIL +
Sbjct: 1278 AIYASSVNDGFTLIQGPPGTGKTKTILGM 1306
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 30.7 bits (66), Expect = 0.13
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 49 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
D ++G E+ + R N + GP GVGKT + LA
Sbjct: 111 DPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLA 153
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 115 PNIIIA--GPPGVGKTTTILXLARVSSEY 195
P +I+A GPPG GK+T I L R S+Y
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVRRYSKY 101
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.23
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTT 159
PNIII G PG GKTT
Sbjct: 9 PNIIICGTPGTGKTT 23
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 29.5 bits (63), Expect = 0.30
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNE 69
W++ YRPQ F D++G+E
Sbjct: 353 WVDTYRPQLFRDLLGDE 369
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.40
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSSEYL 198
I++ G PGVGKT+ I LAR + L
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQL 1587
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 76 VSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
+ +LA +T N P +++ G G GKTTTI LA
Sbjct: 457 LEQLAAGVQT-NEP-LLLVGETGTGKTTTIQLLA 488
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 0.69
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 88 AVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
A+ N +I GPPG GKT TI+ +
Sbjct: 1137 AIMCALDNNGFTLIQGPPGTGKTKTIIGI 1165
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.9 bits (59), Expect = 0.92
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 126 YSWTSWCWEDDDYTXFSASLLGVSFKDAVLXLNASXDRGIDVVG 257
Y+ T CWE +DY +S L N S +GI VVG
Sbjct: 511 YNPTKHCWEGNDYAIRDFD-TPISPSRPALISNISTKKGIQVVG 553
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXLAR 180
+I G PG GKTTTI L R
Sbjct: 952 LILGMPGTGKTTTISSLIR 970
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 351 PSVMLSASSSITILCRPGGKVT 286
P ++L++SSSI LC+P K++
Sbjct: 206 PDIILNSSSSIMALCQPEKKMS 227
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTT 162
P +I GPPG GKT T
Sbjct: 408 PLSLIQGPPGTGKTVT 423
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 93 DX*AGHSVFIANDIVESLWPVFLYPW 16
D A +S FI +E LW + PW
Sbjct: 280 DLLANYSNFITQPTIERLWTILTGPW 305
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 TFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTI 165
T ++ VG + S++ + G N+++ GP G GK+T I
Sbjct: 8 TLNNYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLI 49
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXL 174
+I GPPG GKT T++ +
Sbjct: 229 LIHGPPGTGKTHTLVEI 245
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLAR 180
I++AGPP GKT + +A+
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQ 87
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +1
Query: 94 FAKTGNAP--NIIIAGPPGVGKT 156
F K G P I++ GPPG GKT
Sbjct: 205 FVKLGIDPPKGIMLYGPPGTGKT 227
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 127 IAGPPGVGKTTTILXLARVSSEYLS 201
+ GP G GKT +L L R+ E S
Sbjct: 91 VGGPVGSGKTALLLQLCRLLGEKYS 115
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 91 VFAKTGNAP--NIIIAGPPGVGKT 156
+F + G P +++ GPPG GKT
Sbjct: 157 LFLRVGIKPPKGVLLYGPPGTGKT 180
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSSEYLSKTPY 213
++ GPPG GKT LA S K +
Sbjct: 303 VLFHGPPGTGKTLMARALAAACSSENKKVSF 333
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 52 DIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSE 192
D+ ++ +R K I +AG PG GK+T LA+ +E
Sbjct: 9 DVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKAWNE 55
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLA-RVSSEYLS 201
+++ GPPG GKT +A +S E++S
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVS 718
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVS 186
+++ GPPG GKT LA+ S
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQS 149
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 91 VFAKTGNAP--NIIIAGPPGVGKTTTILXLA 177
V+ TG P +++ GPPG GKT LA
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKTMLANALA 229
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 37 PQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSEYLSKTPY 213
P + D+ N +V ++ + G +P GP G GKT T+ + S YL K +
Sbjct: 1862 PIVYTDLTRNCFSVLLHSIASNLGGSP----IGPAGTGKTETV----KAVSAYLGKNVF 1912
Score = 24.6 bits (51), Expect = 8.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 55 IVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILXLAR 180
++ DTV R A F N +I GPPG GK+ +L R
Sbjct: 2493 VIPTLDTV-RYAEFLNFSLTKNRCVIFCGPPGSGKSMLMLGTLR 2535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,618
Number of Sequences: 5004
Number of extensions: 32152
Number of successful extensions: 176
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -