Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30337
(503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 58 5e-09
SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12) 50 1e-06
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_18015| Best HMM Match : NACHT (HMM E-Value=5) 33 0.18
SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038) 33 0.18
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 31 0.71
SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 29 2.2
SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_19368| Best HMM Match : DEAD (HMM E-Value=4) 29 2.2
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.2
SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17) 29 2.2
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 29 2.9
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 29 2.9
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 28 5.0
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 28 5.0
SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_54958| Best HMM Match : NUDE_C (HMM E-Value=9.8) 27 6.6
SB_33727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_7372| Best HMM Match : Rad17 (HMM E-Value=2.7e-09) 23 7.7
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12) 27 8.8
SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09) 27 8.8
SB_46732| Best HMM Match : AAA (HMM E-Value=0.044) 27 8.8
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 27 8.8
SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16) 27 8.8
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_9408| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 57.6 bits (133), Expect = 5e-09
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSM 343
R KIKMFAQQKVTLP GRHKI+ILDEADS+
Sbjct: 912 RNKIKMFAQQKVTLPKGRHKIIILDEADSL 941
Score = 48.4 bits (110), Expect = 3e-06
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+EKYRP +IVGNE+TVSRL GPPG GKTT+IL LAR
Sbjct: 848 VEKYRPTKLHEIVGNEETVSRLE--------------GPPGTGKTTSILCLAR 886
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 180 SLLGVSFKDAVLXLNASXDRGIDVV 254
+LLGVS KDAVL LNAS DRGIDVV
Sbjct: 887 ALLGVSLKDAVLELNASNDRGIDVV 911
>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
Length = 230
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/56 (48%), Positives = 32/56 (57%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
R I FA + G K+VILDEAD+MT AQ ALRR M ++ TRF L N
Sbjct: 59 RGDILSFASTRTIFKSG-FKLVILDEADAMTQDAQNALRRVMEKFTENTRFCLICN 113
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 94 FAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
F P+++ GPPG GKT+TIL +A+
Sbjct: 4 FINEERLPHLLFYGPPGTGKTSTILAVAK 32
>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
K+V+L E D +T AQ ALRRTM Y+ST R L N++
Sbjct: 47 KVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNST 85
>SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTTILXLA-RVSSEYLS 201
PNI+I G PG GK+TT + LA R+ +Y++
Sbjct: 9 PNILITGTPGTGKSTTGVELANRLGFKYIN 38
>SB_18015| Best HMM Match : NACHT (HMM E-Value=5)
Length = 166
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +1
Query: 7 TNLPWIEKYRPQT----FDDIVGNED-TVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTIL 168
T LPW+E T F D++ ED +V +L ++ N I++ G PG+GKTT
Sbjct: 22 TPLPWMEGLSKHTLQHLFKDLLIAEDGSVVKLCDLLESDNTKKRILLEGNPGIGKTTVSK 81
Query: 169 XLARVSSEYL 198
L + +L
Sbjct: 82 KLVNSWASHL 91
>SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038)
Length = 1172
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 40 QTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSE 192
+T D DT + N +II+AGPPG GK++ I L +E
Sbjct: 1073 ETLDGTTLTIDTTAATGRCTVVRNRTSIIVAGPPGTGKSSCISALIETLTE 1123
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 31.5 bits (68), Expect = 0.41
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGN----ED-TVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTIL 168
T LPW+E T + N ED +V +L ++ N I++ G PG+GKTT
Sbjct: 269 TPLPWMEALSKHTLQHLFKNLLIAEDGSVVKLCDLLESDNTKKRILLEGNPGIGKTTVSK 328
Query: 169 XLARVSSEYL 198
L + +L
Sbjct: 329 KLVNSWASHL 338
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 30.7 bits (66), Expect = 0.71
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 137 GPAIIMLGALPVLAKTAKR-DTVSSLPTISSKVCGLYFSIHGKFVD 3
GP++I LG + L K DT+ S +C +Y +HGK VD
Sbjct: 558 GPSLISLGKVMGLTVIEKYVDTLDKTFKYSKLLCQVYAGVHGKDVD 603
>SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTTILXLARVS 186
P I++AGPPG GKT +A S
Sbjct: 18 PGILLAGPPGCGKTLLAKAIANES 41
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRL 87
LPW E+++P +++GN +RL
Sbjct: 548 LPWSERFKPTCSSEVMGNASATTRL 572
>SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXL 174
+I GPPG GKTTT++ +
Sbjct: 254 VIHGPPGTGKTTTVVEI 270
>SB_19368| Best HMM Match : DEAD (HMM E-Value=4)
Length = 217
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 31 YRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLARV 183
Y+ T I+ + + AV +I G PG GKTTTI L +V
Sbjct: 97 YQDTTVHTIIQELNAGQKRAVCKALTAEDYALILGMPGTGKTTTIACLVKV 147
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTTILXLARVS 186
P I++AGPPG GKT +A S
Sbjct: 18 PGILLAGPPGCGKTLLAKAIANES 41
>SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17)
Length = 786
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 37 PQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
P + VG E + TG + I GPPG GK+ + +A
Sbjct: 102 PAKVPNFVGRESECQAVFTKLTTGPCQIVTITGPPGFGKSCVAIHVA 148
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +1
Query: 124 IIAGPPGVGKTTT 162
+++GPPGVGKTTT
Sbjct: 275 LLSGPPGVGKTTT 287
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+E ++ + D +V DTV ++ +++ GPPG GKT T+ R
Sbjct: 2500 VETHKVASPDVVVPTLDTVRHETLLYTWLAEHKPLVLCGPPGSGKTMTLFSALR 2553
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSSE 192
II+AGPPG GK++ I L +E
Sbjct: 2 IIVAGPPGTGKSSCISALIETLTE 25
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 79 SRLAVFAKTGNAPNIIIAGPPGVGKTT 159
+++ F ++++ GPPG+GKTT
Sbjct: 40 TQVTQFEMAAYKKHVLLTGPPGIGKTT 66
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSSEYL 198
I++ G PGVGKT+ + +A+ S L
Sbjct: 1620 ILLEGSPGVGKTSLVSAIAKASGHEL 1645
>SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 37 PQTFDDI----VGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
P FDD+ EDT A+ K + + GP G GK+T I + R
Sbjct: 157 PIVFDDVRFSYPSREDTEVLKALSFKINPGETVALVGPSGGGKSTVISLIER 208
>SB_54958| Best HMM Match : NUDE_C (HMM E-Value=9.8)
Length = 267
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAP 117
P + P+TFDD + N D R+AV + + P
Sbjct: 34 PASNRLEPETFDDEIMNVDLAKRVAVKLRLEDVP 67
>SB_33727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAP 117
P + P+TFDD + N D R+AV + + P
Sbjct: 34 PASNRLEPETFDDEIMNVDLAKRVAVKLRLEDVP 67
>SB_7372| Best HMM Match : Rad17 (HMM E-Value=2.7e-09)
Length = 421
Score = 23.4 bits (48), Expect(2) = 7.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTI 165
+++ GP G GKT TI
Sbjct: 108 LLLTGPVGAGKTATI 122
Score = 22.2 bits (45), Expect(2) = 7.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 19 WIEKYRPQT 45
WIEKY+P T
Sbjct: 93 WIEKYKPTT 101
>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 79 SRLAVFAKTGNAPNIIIAGPPGVGKTTTI 165
+R ++ + N N+II G G GKTT I
Sbjct: 63 ARKSLITEIRNRQNVIIVGETGSGKTTQI 91
>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVSSE 192
N+++ G PG+GKT L R+ +E
Sbjct: 218 NVLVVGRPGIGKTMMCTRLLRLWAE 242
>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVS------RLAVFAKTGNAPNIIIAGPPGVGKTT 159
T LPW+E T + E T+S ++ K+ ++++ G PGVGKTT
Sbjct: 297 TPLPWMESDPMFTLKKLF-KEPTISENGSNVKINDLFKSKTKQHVLLEGNPGVGKTT 352
>SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12)
Length = 1356
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVSSE 192
N+++ G PG+GKT L R+ +E
Sbjct: 546 NVLVVGRPGIGKTMMCTRLLRLWAE 570
>SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09)
Length = 682
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVSSE 192
N+++ G PG+GKT L R+ +E
Sbjct: 265 NVLVVGRPGIGKTMMCTRLLRLWAE 289
>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
Length = 430
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVS 186
N++ GPPG GKT LAR S
Sbjct: 331 NLLFYGPPGTGKTMFAKSLARHS 353
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 182 TRAKXSIVVVFPTPGGPAIIM-LGALPVLAKTAKRDTVSSLP 60
T AK S+ + GG II+ GA V+AKT T SS+P
Sbjct: 2444 TEAKPSLYLAGRLIGGQEIIVGQGAEVVVAKTGTIGTASSIP 2485
>SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)
Length = 375
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVS------RLAVFAKTGNAPNIIIAGPPGVGKTT 159
T LPW+E T + E T+S ++ K+ ++++ G PGVGKTT
Sbjct: 233 TPLPWMESDPMFTLKKLF-KEPTISENGSNVKINDLFKSKTKQHVLLEGNPGVGKTT 288
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 130 AGPPGVGKTTTILXLARVSSEYLS 201
+GP G GKT T+ LA++ ++ S
Sbjct: 1052 SGPAGTGKTETVKDLAKMMGKFFS 1075
>SB_9408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 240 GIDVVGIR*KCLRNKRLLCH 299
G++ G R C RN+R++CH
Sbjct: 77 GVNHTGCRADCRRNRRIVCH 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,100
Number of Sequences: 59808
Number of extensions: 247365
Number of successful extensions: 812
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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