Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30337
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 98 4e-21
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 70 8e-13
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 54 8e-08
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 40 0.001
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 34 0.051
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 34 0.051
Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical pr... 30 0.83
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 30 0.83
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 4.4
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 4.4
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 4.4
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 27 7.7
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 27 7.7
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 27 7.7
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 27 7.7
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 27 7.7
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 97.9 bits (233), Expect = 4e-21
Identities = 46/63 (73%), Positives = 53/63 (84%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
R +IK FAQ KVTLP GRHKI+ILDEADSMTDGAQQALRRTM +Y+ TTRFALA N S +
Sbjct: 91 RHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEK 150
Query: 434 DLQ 442
++
Sbjct: 151 IIE 153
Score = 80.2 bits (189), Expect = 8e-16
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
PW+EKYRP+ DIVGNE+ V RL V GN PNI+++GPPG GKTT++ LAR
Sbjct: 11 PWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALAR 65
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +3
Query: 144 CWEDDDYTXFSASLLGVSFKDAVLXLNASXDRGIDVVGIR*K 269
C + + LLG K+AVL LNAS +RGIDVV R K
Sbjct: 54 CGKTTSVWALARELLGDKVKEAVLELNASDERGIDVVRHRIK 95
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 390 PVQLVLH*QPITVIEICNKENLSYTEEGVSAVVFTAQG 503
PVQL+ V E+ E ++Y + G+ A++FTAQG
Sbjct: 169 PVQLLTR-----VKEVAKAEKVNYDDGGLEAILFTAQG 201
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 70.1 bits (164), Expect = 8e-13
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +1
Query: 4 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
++NLPW+EKYRP D++V +E V L F + P+++ GPPG GKTTT+L AR
Sbjct: 26 ASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAAR 84
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
K+VILDEAD+MT AQ ALRR + Y+ RF + N
Sbjct: 138 KLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICN 174
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 53.6 bits (123), Expect = 8e-08
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 13 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
L W EKYRP+T DDI ++ V+ L + + P+++ GPPG GKT+ L R
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
KI+ILDE D+MT AQ A+RR + +S TTRF L N
Sbjct: 120 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICN 156
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 198 FKDAVLXLNASXDRGIDVV 254
F D VL LNAS +RGI VV
Sbjct: 78 FHDRVLDLNASDERGIAVV 96
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR---DLQ*RKLIIH 463
K+V+L EADS+T AQ LRRTM Y++ + L+ + R LQ R +II+
Sbjct: 132 KVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIIN 185
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 19 WIEKYRPQTF---DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W++KYRP+ D + + + + L F P+++ GP G GK T I L R
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLR 59
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 34.3 bits (75), Expect = 0.051
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSE 192
IE +R D +V DTV + + A +++ GPPG GKT T+L R E
Sbjct: 2499 IESHRVAAADLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAALRSQQE 2556
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 34.3 bits (75), Expect = 0.051
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 22 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSE 192
IE +R D +V DTV + + A +++ GPPG GKT T+L R E
Sbjct: 2499 IESHRVAAADLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAALRSQQE 2556
>Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical
protein K02E2.8b protein.
Length = 173
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -1
Query: 206 VFERYSEETRAKXSIVVVFPTPGGPAIIML---GALP 105
+F RY EET A V+ F P G A +L G LP
Sbjct: 91 MFRRYPEETTADAQCVITFSCPAGTAAYLLTIVGELP 127
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -1
Query: 206 VFERYSEETRAKXSIVVVFPTPGGPAIIML---GALP 105
+F RY EET A V+ F P G A +L G LP
Sbjct: 106 MFRRYPEETTADAQCVITFSCPAGTAAYLLTIVGELP 142
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARV 183
N+++ GP GVGKT LARV
Sbjct: 143 NVLLVGPSGVGKTFLTQTLARV 164
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARV 183
N+++ GP GVGKT LARV
Sbjct: 259 NVLLVGPSGVGKTFLTQTLARV 280
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 100 KTGNAPNIIIAGPPGVGKTT 159
+T PNI++ G PG GK+T
Sbjct: 5 ETRRRPNILVTGSPGTGKST 24
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 112 APNIIIAGPPGVGKTTTILXLARVSS 189
+P +I+GP G GKTTTI L V++
Sbjct: 43 SPCTLISGPNGTGKTTTIEALNFVTT 68
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 112 APNIIIAGPPGVGKTTTILXLARVSS 189
+P +I+GP G GKTTTI L V++
Sbjct: 29 SPCTLISGPNGTGKTTTIEALNFVTT 54
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 112 APNIIIAGPPGVGKTTTILXLARVSS 189
+P +I+GP G GKTTTI L V++
Sbjct: 29 SPCTLISGPNGTGKTTTIEALNFVTT 54
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSSEYLSK 204
I++ G PG GK++T++ LA+++ +++
Sbjct: 1352 ILLEGAPGCGKSSTVMALAQLTGNPITR 1379
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSS 189
+++AGPPG GKT +A SS
Sbjct: 229 MVLAGPPGTGKTLIARAIASESS 251
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSS 189
+++AGPPG GKT +A SS
Sbjct: 229 MVLAGPPGTGKTLIARAIASESS 251
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 269 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 361
+F QQ VT PP H+I L MT+ A++
Sbjct: 243 LFRQQTVTKPPNPHRISNLRAKVEMTNQAEK 273
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSS 189
+++AGPPG GKT +A SS
Sbjct: 229 MVLAGPPGTGKTLIARAIASESS 251
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 40 QTFDDIVGNEDTVSRLAVFAKTGNAPNIIIA--GPPGVGKTTTILXLA 177
+ DD+ E + LAV + +I+ GPPG+GKT+ +A
Sbjct: 305 EAMDDV--KERVLEHLAVCKMNNSVKGMILCFTGPPGIGKTSIAKAIA 350
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 269 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 361
+F QQ VT PP H+I L MT+ A++
Sbjct: 243 LFRQQTVTKPPNPHRISNLRAKVEMTNQAEK 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,415,280
Number of Sequences: 27780
Number of extensions: 183328
Number of successful extensions: 596
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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