Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30337
(503 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 101 3e-22
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 65 2e-11
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 59 2e-09
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 53 1e-07
At5g27740.1 68418.m03327 expressed protein 49 2e-06
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 44 8e-05
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 40 0.001
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 39 0.002
At4g24790.1 68417.m03550 expressed protein ; expression supporte... 38 0.004
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 38 0.005
At5g66130.1 68418.m08331 cell cycle checkpoint protein-related w... 37 0.007
At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS cla... 34 0.063
At5g45720.1 68418.m05621 hypothetical protein 33 0.083
At4g18820.1 68417.m02778 expressed protein 33 0.083
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 33 0.11
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 33 0.14
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 32 0.19
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 32 0.19
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 32 0.19
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 32 0.25
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 31 0.33
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 31 0.33
At1g73170.1 68414.m08466 expressed protein 31 0.33
At5g66005.2 68418.m08311 Expressed protein 31 0.44
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 31 0.44
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 31 0.58
At5g50340.1 68418.m06235 DNA repair protein-related similar to R... 30 0.77
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 30 0.77
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 30 0.77
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 30 1.0
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 30 1.0
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 30 1.0
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 30 1.0
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 30 1.0
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 29 1.3
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 1.3
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 29 1.3
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 29 1.8
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 29 1.8
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 29 1.8
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 29 1.8
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 29 1.8
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 29 2.4
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 29 2.4
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 29 2.4
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 28 3.1
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 28 3.1
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 28 3.1
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 28 4.1
At1g77620.1 68414.m09037 expressed protein 28 4.1
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 27 5.4
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ... 27 5.4
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ... 27 5.4
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 27 5.4
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 27 5.4
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 27 5.4
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 27 5.4
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 5.4
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 27 5.4
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR... 27 5.4
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 27 5.4
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 27 5.4
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 27 7.2
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 27 7.2
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR... 27 7.2
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 27 7.2
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff... 27 7.2
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 27 7.2
At4g02100.1 68417.m00281 DNAJ heat shock N-terminal domain-conta... 27 7.2
At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to ... 27 7.2
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 27 7.2
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 27 7.2
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 27 7.2
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 27 7.2
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 27 7.2
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 27 9.5
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ... 27 9.5
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 27 9.5
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 27 9.5
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 27 9.5
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote... 27 9.5
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 27 9.5
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 101 bits (242), Expect = 3e-22
Identities = 47/63 (74%), Positives = 56/63 (88%)
Frame = +2
Query: 254 RXKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNSYR 433
R KIKMFAQ+KVTLPPGRHK+VILDEADSMT GAQQALRRT+ +YS++TRFALA N S +
Sbjct: 96 RNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAK 155
Query: 434 DLQ 442
++
Sbjct: 156 IIE 158
Score = 87.0 bits (206), Expect = 6e-18
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
N PW+EKYRP DIVGNED VSRL V A+ GN PN+I++GPPG GKTT+IL LA
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALA 69
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +3
Query: 183 LLGVSFKDAVLXLNASXDRGIDVVGIR*KCLRNKRL 290
LLG ++K+AVL LNAS DRGIDVV + K K++
Sbjct: 72 LLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKV 107
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 65.3 bits (152), Expect = 2e-11
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+S PW+EKYRPQ+ DD+ + D + + P++++ GPPG GKT+TIL +AR
Sbjct: 35 QSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVAR 94
Score = 50.8 bits (116), Expect = 5e-07
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +2
Query: 254 RXKIKMFAQ-QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANN 424
R +I+ FA Q +L K+V+LDEAD+MT AQ ALRR + Y+ +TRFAL N+
Sbjct: 120 RQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNH 177
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 183 LLGVSFKDAVLXLNASXDRGIDVV 254
L G +++ +L LNAS DRGIDVV
Sbjct: 96 LYGPKYRNMILELNASDDRGIDVV 119
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 58.8 bits (136), Expect = 2e-09
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
PW+EKYRP+ D+ E+ V L +T + P+++ GPPG GKTTT L +A
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIA 63
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/37 (67%), Positives = 27/37 (72%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
KI+ILDEADSMT+ AQ ALRRTM YS TRF N
Sbjct: 117 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 153
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 198 FKDAVLXLNASXDRGIDVV 254
+K VL LNAS DRGI+VV
Sbjct: 72 YKSRVLELNASDDRGINVV 90
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/37 (67%), Positives = 27/37 (72%)
Frame = +2
Query: 311 KIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAAN 421
KI+ILDEADSMT+ AQ ALRRTM YS TRF N
Sbjct: 105 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 141
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
PW+EKYRP+ D+ E+ P+++ GPPG GKTTT L +A
Sbjct: 10 PWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTALAIA 51
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 198 FKDAVLXLNASXDRGIDVV 254
+K VL LNAS DRGI+VV
Sbjct: 60 YKSRVLELNASDDRGINVV 78
>At5g27740.1 68418.m03327 expressed protein
Length = 354
Score = 49.2 bits (112), Expect = 2e-06
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
W++KYRP++ D ++ +ED +L + P+++ GP G GK T I+ L +
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLK 56
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 308 HKIVILDEADSMTDGAQQALRRTMXLYSSTTRFALAANNS 427
+K+++L+E D ++ AQ +LRRTM YSS+ R L N+S
Sbjct: 131 YKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSS 170
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVF---AKTGNAPNIIIAGPPGVGKTTTILXLARVS 186
P E+ RP+T DD+VG + +S ++ ++ P+I+ GPPG GKT+ L S
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 187 SE 192
+
Sbjct: 162 KD 163
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 20/72 (27%)
Frame = +1
Query: 7 TNLPWIEKYRPQTFDDIVGNEDTVSRL--------AVFAKTGNAPN------------II 126
T+LPW EKYRP+ ++IVGN+ V++L F TG+ ++
Sbjct: 338 TSLPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVL 397
Query: 127 IAGPPGVGKTTT 162
++G PG+GKTT+
Sbjct: 398 LSGTPGIGKTTS 409
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILXLA 177
+KY+P FD+++G V L K G ++ + GP G GKT+T L+
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILS 477
>At4g24790.1 68417.m03550 expressed protein ; expression supported
by MPSS
Length = 815
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTT 162
+K+RP++FD++VG E V L G ++ + GP G GKT+T
Sbjct: 243 QKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTST 289
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTT 162
+KYRP F++++G V L K AP + GP G GKT+T
Sbjct: 453 QKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTST 499
>At5g66130.1 68418.m08331 cell cycle checkpoint protein-related weak
similarity to cell cycle checkpoint protein RAD17 [Homo
sapiens] GI:4102916
Length = 599
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Frame = +1
Query: 1 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAV-------FAKTGNAPNI-IIAGPPGVGKT 156
K+T+L W++KYRP+T +++ ++ V + + F K G N+ ++ G GVGK+
Sbjct: 88 KNTDL-WVDKYRPRTLEELSVHKKKVDEVKLWFQESLDFLKNGLRNNVLLVTGQAGVGKS 146
Query: 157 TTI 165
TI
Sbjct: 147 ATI 149
>At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 531
Score = 33.9 bits (74), Expect = 0.063
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLA--VFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSE 192
F D+VG ED + +L ++ + I I GPPG+GKT+ L R S+
Sbjct: 237 FSDLVGMEDHMKKLERMLYLDLNDVRMIGIWGPPGIGKTSIARVLFRKHSD 287
>At5g45720.1 68418.m05621 hypothetical protein
Length = 900
Score = 33.5 bits (73), Expect = 0.083
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
+KY P+TF D++G V L+ AK + GP G GKT+ AR
Sbjct: 347 QKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFAR 399
>At4g18820.1 68417.m02778 expressed protein
Length = 1111
Score = 33.5 bits (73), Expect = 0.083
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSEYLS 201
EKY P+TF D++G V L+ A+ + GP G GKT+ AR + +
Sbjct: 435 EKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNCHSM 494
Query: 202 KTP 210
+ P
Sbjct: 495 EQP 497
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +1
Query: 31 YRP-QTFDDIVGNEDTVSRL--AVFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSEYLS 201
Y P + FDD VG ++R+ + ++ + I I GPPG+GKTT +ARV + +S
Sbjct: 225 YTPSRDFDDYVGIRPHITRINSLLCLESSDVRMIGILGPPGIGKTT----IARVLYDQIS 280
Query: 202 K 204
+
Sbjct: 281 E 281
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 49 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
D ++G ++ + R+ N ++ G PGVGKT + LA+
Sbjct: 179 DPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQ 222
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 32.3 bits (70), Expect = 0.19
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLA--VFAKTGNAPNIIIAGPPGVGKTTTILXL-ARVSSEYLS 201
F+D+VG ED +++++ + ++ + I GP G+GKTT L +R+S ++ S
Sbjct: 184 FEDLVGIEDHITKMSSLLHLESEEVRMVGIWGPSGIGKTTIARALFSRLSCQFQS 238
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVSSEYLSK 204
+I+ G PGVGKTT + +ARV S+ K
Sbjct: 166 SILFVGRPGVGKTTVLREIARVLSDEFQK 194
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVSSEYLSK 204
+I+ G PGVGKTT + +ARV S+ K
Sbjct: 166 SILFVGRPGVGKTTVLREIARVLSDEFQK 194
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 31.9 bits (69), Expect = 0.25
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
E R D ++G +D + R N +I G PGVGKT LA+
Sbjct: 251 EMARRGKLDPVIGRDDEIRRCIQILCRRTKNNPVIIGEPGVGKTAIAEGLAQ 302
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 34 RPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
R D ++G +D + R N ++ G PGVGKT LA+
Sbjct: 249 REGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQ 297
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 16 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXL 174
P + K ++F N D + A+ + ++ GPPG GKTTT++ +
Sbjct: 173 PSVSKKDVKSFTPFNKNLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEI 225
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARV 183
++++ GPPGVGKTT I +AR+
Sbjct: 199 SLLLIGPPGVGKTTMIREVARM 220
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 31.1 bits (67), Expect = 0.44
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 106 GNAPNIIIAGPPGVGKTTTI---LXLARVSSEYL 198
G +++ GPPGVGKTT I L + RVS+ L
Sbjct: 3 GTGKCLLVTGPPGVGKTTLIMRVLDMMRVSNPNL 36
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 31.1 bits (67), Expect = 0.44
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTTILXLARVSS 189
PN++I G PG GK+TT LA ++
Sbjct: 14 PNLLITGTPGTGKSTTASALAEATN 38
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFAK--TGNAPNIIIAGPPGVGKTT 159
FDD++G D + ++ + I I GPPGVGKTT
Sbjct: 234 FDDLIGMGDHMEKMKPLLDIDSDEMKTIGIWGPPGVGKTT 273
>At5g50340.1 68418.m06235 DNA repair protein-related similar to RadA
[Pseudomonas aeruginosa] GI:1881700
Length = 491
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 106 GNAPN--IIIAGPPGVGKTTTILXLARVSSE 192
G AP I+I G PG+GK+T +L +A + +E
Sbjct: 112 GLAPGSLILIGGDPGIGKSTLLLQIASIIAE 142
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 30.3 bits (65), Expect = 0.77
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVSSE 192
+I++ G PGVGKTT I +AR+ ++
Sbjct: 215 SILVIGSPGVGKTTLIREIARMLAD 239
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 30.3 bits (65), Expect = 0.77
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVSSE 192
+I++ G PGVGKTT I +AR+ ++
Sbjct: 215 SILVIGSPGVGKTTLIREIARMLAD 239
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVSSEYLSKTPY 213
+++AGPPG GKT L +S E SK P+
Sbjct: 69 LLLAGPPGTGKTALALG---ISQELGSKVPF 96
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 49 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLAR 180
D ++G + R+ N ++ G PGVGKT + LA+
Sbjct: 144 DPVIGRHREIRRVIEVLSRRTKNNPVLIGEPGVGKTAVVEGLAQ 187
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 49 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA-RVSSEYLSKT 207
D +VG + + R+ N + G PGVGKT LA R++S + +T
Sbjct: 295 DPVVGRQPQIERMVQILARRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPET 348
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 118 NIIIAGPPGVGKTTTILXLARVS 186
NI++ GPPG GKT LAR S
Sbjct: 399 NILLHGPPGTGKTMAARELARKS 421
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 64 NEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 168
N + + + + AP +I GPPG GKT T++
Sbjct: 398 NAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLV 432
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 100 KTGNAPNIIIAGPPGVGKTTTILXLARVSSEYLSKTPY 213
++G+ I I GPPG+GKTT L SE T +
Sbjct: 210 ESGDVRMIGIVGPPGIGKTTIARALRDQISENFQLTAF 247
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXL 174
++I GPPG GKT TIL +
Sbjct: 276 VLIQGPPGTGKTQTILSI 293
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXLARVSSEYLSKT 207
++ GPPG GK+T +L LA + L KT
Sbjct: 190 LLLGPPGSGKSTLLLALAGKLDKSLKKT 217
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 49 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA-RVSSEYLSKT 207
D +VG + + R+ N + G PGVGKT LA R++S + +T
Sbjct: 274 DPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPET 327
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 100 KTGNAP--NIIIAGPPGVGKTTTILXLARVS 186
K AP NI+ GPPG GKT LAR S
Sbjct: 392 KAHQAPFRNILFYGPPGTGKTMAARELARRS 422
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 70 DTVSRLAVFAKTGNAP--NIIIAGPPGVGKTTTILXLARVS 186
+ ++R K+ AP N++ GPPG GKT +AR S
Sbjct: 354 ERLARATANTKSHQAPFRNMMFYGPPGTGKTMVAREIARKS 394
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 70 DTVSRLAVFAKTGNAP--NIIIAGPPGVGKTTTILXLARVS 186
+ ++R K+ AP N++ GPPG GKT +AR S
Sbjct: 369 ERLARATANTKSHKAPFRNMMFYGPPGTGKTMVAREIARKS 409
>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 966
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFAKTGNAPNIIIAG---PPGVGKTTTILXL-ARVSSEY 195
F+D+VG E + ++ N +I G P G+GKTT L +R+SS +
Sbjct: 183 FEDMVGIEAHLQKMQSLLHLDNEDEAMIVGICGPSGIGKTTIARALHSRLSSSF 236
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRL-AVFAKTGNAPNII-IAGPPGVGKTT 159
FDD++G E + ++ ++ + N +I I GP G+GKTT
Sbjct: 228 FDDLIGMEAHMEKMKSLLSLHSNEVKMIGIWGPSGIGKTT 267
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFA--KTGNAPNIIIAGPPGVGKTT 159
F DIVG E + ++ K+ A + I+GP G+GKTT
Sbjct: 180 FSDIVGIEAHLEAMSSILRLKSEKARMVGISGPSGIGKTT 219
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXLARVS 186
I++ G PGVGKT+ IL L + S
Sbjct: 1748 ILLEGSPGVGKTSLILALGKYS 1769
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 121 IIIAGPPGVGKTTTILXL 174
++++GPPG GKTT + L
Sbjct: 192 VVVSGPPGCGKTTLVTKL 209
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 260 KIKMFAQQKVTLPP--GRHKIVILDEADSMTD-GAQQALR 370
+IK+ + +PP R K ++LDEAD + D G Q LR
Sbjct: 186 RIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELR 225
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 19 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA 114
W++KY P +F +++ +E T + ++ K +A
Sbjct: 234 WVDKYSPSSFTELLSDEQTNREVLLWLKQWDA 265
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 76 VSRLAVFAKTGNAP--NIIIAGPPGVGKTT 159
+ A F K G +P I++ GPPG KTT
Sbjct: 306 IKHSAAFVKMGISPMRGILLHGPPGCSKTT 335
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 27.9 bits (59), Expect = 4.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 10 NLPWIEKYRPQTFDDIVGNEDTV 78
N W++KY+P++ ++ GN ++V
Sbjct: 310 NRLWVDKYQPRSASEVCGNTESV 332
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 34 RPQTFDDIVGNEDTVSRLAVFAKTGNA--PNIIIAGPPGVGKTTTILXLA 177
+ Q DD+ +D + KTG A ++ GPPG GK++ I +A
Sbjct: 212 KQQIMDDL---KDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMA 258
>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNII-IAGPPGVGKTT 159
+ Y + D+VG E +V L + ++ IAG G+GKTT
Sbjct: 155 QTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTT 200
>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNII-IAGPPGVGKTT 159
+ Y + D+VG E +V L + ++ IAG G+GKTT
Sbjct: 155 QTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTT 200
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Frame = +1
Query: 34 RPQTF--DDIVGNEDTVSRLAVFAKTGNAPN------IIIAGPPGVGKTTTILXLAR 180
R QT +D G D R+ F G I ++GPPGVGKT+ +AR
Sbjct: 423 RAQTILDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGRSIAR 479
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 55 IVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
++G E VS L FAK+G I++AG GVGKTT LA
Sbjct: 161 LMGGE--VSELQ-FAKSGPTV-ILLAGLQGVGKTTVCAKLA 197
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXLA 177
++ GPPG GKTT +L L+
Sbjct: 166 LLLGPPGCGKTTLLLALS 183
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRL-AVFAKTGNAPNII-IAGPPGVGKTT 159
F+D+VG E ++++ ++ I+ I GP GVGKTT
Sbjct: 181 FNDLVGMEAHIAKMESLLCLESQGVRIVGIWGPAGVGKTT 220
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFA--KTGNAPNIIIAGPPGVGKTT 159
FD+ G ED + L++ ++ + I GP G+GKTT
Sbjct: 178 FDEFFGIEDHIKELSLLLCLESEEVRMVGIWGPTGIGKTT 217
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFAKTG--NAPNIIIAGPPGVGKTT 159
FDD VG + R + I I GPPG+GKTT
Sbjct: 210 FDDFVGMAAHMERTEQLLRLDLDEVRMIGILGPPGIGKTT 249
>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 992
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFAKTGNAPNIIIAG---PPGVGKTTTILXLARVSSEYLSKT 207
F+D+VG E + ++ N +I G P G+GKTT L + S+ T
Sbjct: 141 FEDMVGVETHLEKIQSLLHLDNDDEAMIVGIYGPAGIGKTTIARALHSLLSDRFQLT 197
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXLARVSSEYLSKT 207
++ GPP GKTT +L LA + L +T
Sbjct: 184 LLLGPPSSGKTTLLLALAGKLDQELKQT 211
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 106 GNAPN--IIIAGPPGVGKTTTILXLAR 180
G AP +++ GPPGVGK+ I L +
Sbjct: 79 GEAPPFVVVVQGPPGVGKSLVIKSLVK 105
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 49 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
D ++G E V R+ N I+ G GVGKT LA
Sbjct: 288 DPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLA 330
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXLARVSSEYLSKT 207
+I GPPG GKT T+ L + KT
Sbjct: 269 LIWGPPGTGKTKTVATLLSTLMQLKCKT 296
>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 780
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRL-AVFAKTGNAPNII-IAGPPGVGKTT 159
F+D++G E V+ L ++ N +I + GP G+GKTT
Sbjct: 187 FEDLLGLEAHVANLKSMLGLESNEVKMIGVWGPAGIGKTT 226
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 40 QTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILXLA 177
+ D VG +D R+ K G ++ GPPG GK++ + +A
Sbjct: 225 EDLDRFVGRKDFYKRVGKAWKRG----YLLYGPPGTGKSSLVAAMA 266
>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1311
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTTILXLARV 183
P ++ GPPG GKT T+ + V
Sbjct: 660 PFTLVQGPPGTGKTHTVWGMLNV 682
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 27.1 bits (57), Expect = 7.2
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Frame = +1
Query: 4 STNLPW--IEKYRPQTFD----DIVGNEDTVSRLAVFA-------KTGNA--PNIIIAGP 138
S LPW + P TFD D V + + L FA +TG A ++ GP
Sbjct: 186 SRGLPWESVPFKHPSTFDTLAMDPVKKQQIMEDLKDFAECQSFYERTGRAWKRGYLLYGP 245
Query: 139 PGVGKTTTILXLA 177
PG GK++ I +A
Sbjct: 246 PGTGKSSMIAAMA 258
>At4g02100.1 68417.m00281 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 546
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 138 SWCWEDDDYTXFSASLLGVSFKDAVLXLNASXDRGIDVVGI 260
S CW DD + FS+ G S +V+ +AS R + +
Sbjct: 191 SICWSDDSFILFSSEDGGSSPPSSVVVTSASQPRSESIAHV 231
>At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to
guanylate kinase (GK-2) [Arabidopsis thaliana]
gi|7861798|gb|AAF70409
Length = 389
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 106 GNAPN-IIIAGPPGVGKTTTILXLAR 180
GNA I+I+GP GVGK T I L +
Sbjct: 134 GNAEKPIVISGPSGVGKGTLISMLMK 159
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 103 TGNAPNIIIAGPPGVGKTTTILXLAR 180
T I ++GPPGVGKT+ +AR
Sbjct: 437 TSQGKIICLSGPPGVGKTSIGRSIAR 462
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 106 GNAPN-IIIAGPPGVGKTTTILXLAR 180
GNA I+I+GP GVGK T I L +
Sbjct: 134 GNAEKPIVISGPSGVGKGTLISMLMK 159
>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
effector-related similar to Endonuclease sen1
(Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
to tRNA-splicing endonuclease positive effector
(Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
Length = 1090
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 115 PNIIIAGPPGVGKTTTILXLARV 183
P ++ GPPG GKT T+ + V
Sbjct: 496 PFTLVQGPPGTGKTHTVWGMLNV 518
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 67 EDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTT 162
ED + R ++ NI +I GPPG GKT T
Sbjct: 272 EDAILRCLEAKSCNHSNNIKLIWGPPGTGKTKT 304
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 124 IIAGPPGVGKTTTILXL 174
+I GPPG GKT TI+ +
Sbjct: 1128 LIQGPPGTGKTRTIVAI 1144
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 106 GNAPNIIIAGPPGVGKTTTILXLARVS 186
G +++ GPPG GKT +AR S
Sbjct: 120 GPQKGVLLYGPPGTGKTMLAKAIARES 146
>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 908
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 25 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNII-IAGPPGVGKTT 159
+ Y + D+VG E +V L + ++ IAG G+GKTT
Sbjct: 155 QTYPDSSESDLVGVEQSVEELVGHLVENDIYQVVSIAGMGGIGKTT 200
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLA--VFAKTGNAPNIIIAGPPGVGKTTTILXLARVSSEYLS 201
FD +VG + ++ + T I I GPPG+GKTT +ARV LS
Sbjct: 233 FDGLVGMRAHLEKMKPLLCLDTDEVRIIGIWGPPGIGKTT----IARVVYNQLS 282
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 55 IVGNEDTVSRLAVFAKTGNAPNII-IAGPPGVGKTTTILXLARVSSEYLSK 204
+VGN + ++ F II + GP GVGKTT + +++E ++K
Sbjct: 155 VVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTT---LMQSINNELITK 202
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 31 YRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILXLA 177
+ P+ +DDIV T S+ N P ++ GPPG GKT+ +A
Sbjct: 340 HSPEVYDDIV--RGTRSKFE-----SNRPRAVLFEGPPGTGKTSCARVIA 382
>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
kinase, putative CLAVATA1 receptor kinase, Arabidopsis
thaliana, EMBL:ATU96879
Length = 1002
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -1
Query: 374 CVLMLVELRQSCCPLHLVS-LFYV 306
CVL +++LR S P+H V+ +FYV
Sbjct: 916 CVLKVIDLRLSSVPVHEVTHVFYV 939
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 46 FDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTT 159
FD +VG E + + N + IAGP G+GKTT
Sbjct: 184 FDGMVGIEAHLREIKSLLDLDNVEVKIVAIAGPAGIGKTT 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,638,931
Number of Sequences: 28952
Number of extensions: 165578
Number of successful extensions: 754
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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