Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30336
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    28   1.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   3.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.4  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   5.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   5.8  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   7.6  

>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 5   RTLHDFALQWLTKIGPKYPQEFKTMMQQSSELRNKLESALKSS 133
           RTL  FA + L+  G   PQEF+ + Q +    N L   + +S
Sbjct: 300 RTLSTFAREQLSHWGISNPQEFQILRQMTGWAVNSLREHMHAS 342


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 285 KTF*IIRVELCAKVYLKSLKSVLSCIVGLARFASNTGLCCCVGRPE 148
           KTF II  +LC K+  +  +  LS   G   +  N  L C    P+
Sbjct: 141 KTF-IILSQLCPKLPAELCRVFLSYATGCVNYGHNVALTCFENSPK 185


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 143 SRSDSTSERSLTYCAA 96
           SR DSTS  S TYC A
Sbjct: 460 SRPDSTSHASCTYCVA 475


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 14  HDFALQWLTKIGPKYPQEFKTMMQQSSELRN 106
           H  + Q L+ +   YPQ  KT+   S +LR+
Sbjct: 315 HSLSEQSLSPVSESYPQYAKTLRLTSDQLRS 345


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 305 IILTANRRRFESFESNYAR 249
           I+LTA+  RFES ES + R
Sbjct: 614 IVLTADSERFESQESKFLR 632


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 158 GGPNDSRSDSTSERSLTYCAAPKTVAS 78
           G PN   + S +E +LT   APK V++
Sbjct: 80  GTPNSDIASSNNEPALTVTGAPKQVST 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,422
Number of Sequences: 5004
Number of extensions: 35919
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)