Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30336
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0433 + 3282195-3285185 32 0.36
12_01_0736 + 6582371-6585370 31 0.48
12_01_0718 + 6339982-6342981 31 0.48
12_01_0727 + 6446283-6449300 31 0.63
01_01_0430 + 3258438-3259200,3259929-3261454 31 0.83
03_02_0108 + 5665858-5666048,5666402-5666453 30 1.5
12_01_0741 + 6649988-6653065 29 1.9
12_01_0740 + 6646471-6649407 29 3.4
12_01_0731 - 6516894-6517473,6517485-6519574 29 3.4
12_01_0722 + 6355972-6359031 29 3.4
04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174 28 5.9
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 28 5.9
>01_01_0433 + 3282195-3285185
Length = 996
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = -3
Query: 392 RNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANR 285
+N ++L+ +N Q GG++PC + P+ +V++L +N+
Sbjct: 707 KNLVVLNVANNQIGGSFPCWMHLLPKLQVLVLKSNK 742
>12_01_0736 + 6582371-6585370
Length = 999
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -3
Query: 413 RLPRP--SDRNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANR 285
+LPR + RN +L N Q ++PC +++ PQ +V++L +NR
Sbjct: 700 KLPRSLVACRNLEILDIGNNQISDSFPCWMSKLPQLQVLVLKSNR 744
>12_01_0718 + 6339982-6342981
Length = 999
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -3
Query: 413 RLPRP--SDRNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANR 285
+LPR + RN +L N Q ++PC +++ PQ +V++L +NR
Sbjct: 700 KLPRSLVACRNLEILDIGNNQISDSFPCWMSKLPQLQVLVLKSNR 744
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = -3
Query: 413 RLPRP--SDRNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANRRRFESFESNYA 252
+LPR + RN +L N + ++PC +++ PQ +V++L ANR + + +Y+
Sbjct: 705 QLPRSLVACRNLEILDIGNNKISDSFPCWMSKLPQLQVLVLKANRFIGQILDPSYS 760
>01_01_0430 + 3258438-3259200,3259929-3261454
Length = 762
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3
Query: 392 RNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANR 285
+N ++L N Q GG++PC + P+ +V++L +N+
Sbjct: 478 KNLVVLDVGNNQIGGSFPCWMHLLPKLQVLVLKSNK 513
>03_02_0108 + 5665858-5666048,5666402-5666453
Length = 80
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 189 ASNTGLCCCVGRPERFPL*LDFRALSNLLRSSEDCCIIVLN 67
A+ +CCC P L L RA ++ L++ + CI++L+
Sbjct: 38 ATRLPVCCCPAGPPLSTLLLSVRATASCLKTLNNYCILLLH 78
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3
Query: 413 RLPRP--SDRNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANRRRFESFESNYAR 249
+LPR + RN +L N Q ++PC +++ P +V++L +N+ + + +Y R
Sbjct: 714 QLPRSLVACRNLEILDIGNNQISDSFPCWMSKLPVLRVLVLQSNKFIGQVLDPSYTR 770
>12_01_0740 + 6646471-6649407
Length = 978
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 413 RLPRP--SDRNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANRRRFESFESNYAR 249
+LPR + RN +L N Q +PC +++ P+ +V++L +N+ + + Y R
Sbjct: 678 QLPRSLVACRNLEILDIGNNQISDHFPCWMSKLPELQVLVLKSNKFHGKIMDPLYTR 734
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 389 NALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANRRRFESFESNYAR 249
N +L N + ++PC +++ PQ V++L +NR + + +Y R
Sbjct: 698 NLEILDIGNNKISDSFPCWMSKLPQLLVLVLKSNRFSGQILDPSYTR 744
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 413 RLPRP--SDRNALLLHGSNRQGGGTYPCGLTRGPQ*KVIILTANRRRFESFESNYAR 249
+LPR + RN +L N Q +PC +++ P+ +V++L +N+ + + Y R
Sbjct: 719 QLPRSLVACRNLEILDIGNNQISDHFPCWMSKLPELQVLVLKSNKFHGKIMDPLYTR 775
>04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174
Length = 202
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 554 FFFYCLDVWTSSQSTC 507
F YCLD W Q+TC
Sbjct: 119 FHLYCLDAWLLKQTTC 134
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 47 GPKYPQEFKTMMQQSSELRNKLESALKSSQSGNRSGRPTQQQRP 178
G P +++Q + L N L +ALK +Q+ R G QQ+P
Sbjct: 117 GAVAPPFASSLIQPNPTLSNALVAALKRAQANQRRGCVELQQQP 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,073,903
Number of Sequences: 37544
Number of extensions: 255128
Number of successful extensions: 694
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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