Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30336
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54497| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06)                31   0.85 
SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)                 29   2.0  
SB_29959| Best HMM Match : GoLoco (HMM E-Value=5.4e-17)                29   3.4  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       28   4.5  
SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)                      28   4.5  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   27   7.9  

>SB_54497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/79 (43%), Positives = 56/79 (70%)
 Frame = +2

Query: 5   RTLHDFALQWLTKIGPKYPQEFKTMMQQSSELRNKLESALKSSQSGNRSGRPTQQQRPVF 184
           +TLHD ALQ L KIGP+YP  FK +M  + EL+ +LE+A+++SQ+ +++  P+ Q +   
Sbjct: 27  KTLHDHALQRLMKIGPQYPHPFKAIMTSAPELKQQLEAAIRASQASSKAKAPSTQPK--- 83

Query: 185 DAXRAKPTIQLKTDFSDFR 241
            A  A P+I+L+ DFS+++
Sbjct: 84  -AAPAAPSIKLRMDFSNYK 101


>SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06)
          Length = 380

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 26  LQWLTKIGPKYPQEFKTMMQQSSELRNKLESALKSSQSGNRSGRPTQ 166
           LQ + K G K P E  + +Q   +LRN+LE  + S +  N      Q
Sbjct: 304 LQRVVKDGLKEPDETVSSVQNRGDLRNELEEMIASEEDHNEDSDDEQ 350


>SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
          Length = 519

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 89  SSELRNKLESALKSSQSGNRSGRPTQQQ 172
           S+E+RN ++  L+  Q+G R GR T +Q
Sbjct: 311 SAEIRNGVDKKLRKEQAGYRRGRGTTEQ 338


>SB_29959| Best HMM Match : GoLoco (HMM E-Value=5.4e-17)
          Length = 774

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 201 NLLYNLKRTSAILGKPSRIVRLE*FKTSSISC*YDHFLLRTSCESARVG 347
           +L+ N+K+ +AIL +  + + L+  K   +   +D++   T  E+A++G
Sbjct: 453 DLVKNMKKAAAILKRYGKPISLDTEKPRELHVTFDYYCCYTEHEAAKIG 501


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 62  QEFKTMMQQSSELRNKLESALKSSQSGNRSGRPTQQQ 172
           +EF TM+Q+  +L+ K+E+        + +G P Q Q
Sbjct: 79  EEFNTMLQEYEKLKAKMENLPTEMDGQSSNGIPKQHQ 115


>SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)
          Length = 653

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 560 FFFFFYCLDVWTSSQSTCVRWLLELIDTYNVIARH 456
           F  +  C+     S S C+R LL+ + TY+ I R+
Sbjct: 440 FEHYSVCIRALLQSPSVCIRALLQSLGTYSSITRY 474


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 53  KYPQEFKTMMQQSSE-LRNKLESALKSSQSGNRSGRPTQQQRPVFDAXRAK 202
           K  ++ K+ +Q+  + +R+KL    KS       G PT+QQ  ++   RAK
Sbjct: 432 KKVKKSKSFLQKHGDKIRSKLSFRKKSKPKTETKGGPTKQQMLLYIEERAK 482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,038
Number of Sequences: 59808
Number of extensions: 290430
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)