Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30336
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30350.1 68417.m04313 heat shock protein-related contains sim... 31 0.53
At5g01560.1 68418.m00071 lectin protein kinase, putative similar... 30 0.92
At4g28220.1 68417.m04044 NADH dehydrogenase-related similar to 6... 30 0.92
At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At5g57710.1 68418.m07214 heat shock protein-related contains sim... 29 1.6
At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger) fa... 29 1.6
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 29 2.8
At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa... 28 3.7
At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin... 28 4.9
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At3g22600.1 68416.m02855 protease inhibitor/seed storage/lipid t... 27 8.6
At1g31640.1 68414.m03885 MADS-box protein-related contains INTER... 27 8.6
At1g22310.2 68414.m02792 DNA-binding protein-related contains Pf... 27 8.6
At1g22310.1 68414.m02791 DNA-binding protein-related contains Pf... 27 8.6
>At4g30350.1 68417.m04313 heat shock protein-related contains
similarity to heat shock protein 101 [Triticum aestivum]
gi|6013196|gb|AAF01280
Length = 924
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 86 QSSELRNKLESALKSSQSGNRSGRPTQQQRPV 181
Q L N L +ALK +Q+ R G P QQQ+P+
Sbjct: 105 QEPLLSNALTAALKRAQAHQRRGCPEQQQQPL 136
>At5g01560.1 68418.m00071 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 691
Score = 30.3 bits (65), Expect = 0.92
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = -2
Query: 204 GLARFASNTGLCCCVGRPERFPL*LDFRALSNLLRSSEDCCIIVLNSWGY 55
G AR A GL CC +PE PL R + L ED I ++WGY
Sbjct: 602 GEARLALAVGLLCCHHKPESRPL---MRMVLRYLNRDEDVPEI-HDNWGY 647
>At4g28220.1 68417.m04044 NADH dehydrogenase-related similar to 64
kDa mitochondrial NADH dehydrogenase [Neurospora crassa]
GI:4753821, alternative NADH-dehydrogenase [Yarrowia
lipolytica] GI:3718005; contains Pfam profile PF00070:
Pyridine nucleotide-disulphide oxidoreductase
Length = 571
Score = 30.3 bits (65), Expect = 0.92
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +2
Query: 11 LHDFALQWLTKIGPKYPQEFK-TMMQQSSELRNKLESALKS--SQSGNRSGRPTQQQRPV 181
LHDF ++ +TKI P + K T++Q + N + + S Q R G Q V
Sbjct: 233 LHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRDGIDVQTGMRV 292
Query: 182 FDAXRAKPTIQLKT 223
T+++K+
Sbjct: 293 MSVTDKDITVKVKS 306
>At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger)
family protein zinc finger protein, Arabidopsis
thaliana, gb:L76926
Length = 225
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 554 FFFYCLDVWTSSQSTCVRWLLELIDTYNVIARHSP*DISSKV 429
F C+D+W +S +TC L LI +V H +I S +
Sbjct: 120 FHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSI 161
>At5g57710.1 68418.m07214 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 990
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 98 LRNKLESALKSSQSGNRSGRPTQQQRPV 181
+ N L +ALK +Q+ R G P QQQ+P+
Sbjct: 96 ISNALMAALKRAQAHQRRGCPEQQQQPL 123
>At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 554 FFFYCLDVWTSSQSTC 507
F C+DVW SSQSTC
Sbjct: 146 FHANCIDVWLSSQSTC 161
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 274 NHSSRTMREGLPKIAEVRFK-LYSRFSSXRVEHGPLLLRRAARTIPAL 134
+H +R +REG+ K+ ++RF L S V G +L R A T L
Sbjct: 146 DHVTRDIREGIAKLGDLRFNVLDSAGIETEVSSGTILGRTTAMTANVL 193
>At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger)
family protein RING-H2 finger protein RHA1a, Arabidopsis
thaliana,AF078683
Length = 236
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 554 FFFYCLDVWTSSQSTCVRWLLELIDTYNVIARHSP*DISSKV 429
F C+D+W +S +TC L LI ++ H +I S +
Sbjct: 134 FHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSI 175
>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 554 FFFYCLDVWTSSQSTCVRWLLELIDTYNVIARHS 453
F YC+D W S + C +++ +I HS
Sbjct: 77 FHLYCIDTWLRSHTNCPLCRAPIVEANTMIDDHS 110
>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
finger (C3HC4-type RING finger) family protein similar
to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
GI:3790591; contains Pfam profiles PF00097: Zinc finger
C3HC4 type (RING finger), PF04588: Hypoxia induced
protein conserved region
Length = 349
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 554 FFFYCLDVWTSSQSTCVRWLLELIDTYNVIARHS 453
F +C+D W S STC L T NV HS
Sbjct: 230 FHLHCIDTWLLSNSTCPLCRRSL-STSNVCYNHS 262
>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 327
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 554 FFFYCLDVWTSSQSTC 507
F C+DVW SS+STC
Sbjct: 151 FHASCIDVWLSSRSTC 166
>At3g22600.1 68416.m02855 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 170
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 117 LSNLLRSSEDCCIIVLNSWGYLGPIFVSHCRA----KSCNVRT 1
LS +++SS DC VLN G I V+ +A ++CNV+T
Sbjct: 57 LSRVVQSSPDCLCQVLNGGGSQLGINVNQTQALGLPRACNVQT 99
>At1g31640.1 68414.m03885 MADS-box protein-related contains
INTERPRO:IPR02100 MADS-box domain ;similar to MADS box
transcription factor GI:3688589 from [Triticum aestivum]
Length = 464
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 71 KTMMQQSSELRNKLESALKSSQSGNRSGRPTQQQRPVFDAXRAKPTIQ 214
KTMM + LR+++ +S R R TQ + +FD K + Q
Sbjct: 79 KTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVGGKMSEQ 126
>At1g22310.2 68414.m02792 DNA-binding protein-related contains Pfam
profiles PF02178: AT hook motif, PF01429: Methyl-CpG
binding domain
Length = 524
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 62 QEFKTMMQQSSELRNKLESALKSSQSGNRSGRPTQQQRPV 181
Q+F+T + S+ LR+ LES K+ +S T Q+PV
Sbjct: 374 QQFETCKEVSTYLRSLLESPSKNQHYYLQSDNKTLGQQPV 413
>At1g22310.1 68414.m02791 DNA-binding protein-related contains Pfam
profiles PF02178: AT hook motif, PF01429: Methyl-CpG
binding domain
Length = 425
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 62 QEFKTMMQQSSELRNKLESALKSSQSGNRSGRPTQQQRPV 181
Q+F+T + S+ LR+ LES K+ +S T Q+PV
Sbjct: 275 QQFETCKEVSTYLRSLLESPSKNQHYYLQSDNKTLGQQPV 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,979,319
Number of Sequences: 28952
Number of extensions: 192801
Number of successful extensions: 532
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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