Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30335
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    30   0.37 
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   6.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.0  

>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 458 LPHTSNQNALLLHGRNRRVVVPIRADSQKVLPSVKN*DLLKILYIFNHAL*QL 616
           LP+T N   L LHG NR     I A S +V    +    +K+   F  ++ +L
Sbjct: 198 LPYTGNSRGLYLHGLNRNCPQFITASSCEVAEFAEQWGFMKVSSFFMDSIHEL 250


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -3

Query: 405 HLRCRYLLAPVTTKHQVDRQLESPINVIKKW 313
           +LRC+YL + +TT H  ++++++ + +   W
Sbjct: 600 NLRCKYLFSKLTTLH--EKEIDTLLTIPNIW 628


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 520 TYPCGLTKGPTISKK--LGSTKNIVHI*SCTLAVINKCT 630
           TYPC     P+ISKK   GS K      SC     N CT
Sbjct: 381 TYPCSSLPSPSISKKDENGSVKEWFGYYSCN----NPCT 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,898
Number of Sequences: 5004
Number of extensions: 48896
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)