Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30335
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2497| Best HMM Match : C2 (HMM E-Value=2.3e-06)                     28   6.5  
SB_26951| Best HMM Match : CUB (HMM E-Value=0)                         28   8.5  

>SB_2497| Best HMM Match : C2 (HMM E-Value=2.3e-06)
          Length = 466

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 436 GLSVVTMTTPYFKPKRITASRQK*EGGSTYPCGLTKGPTISKKLGSTKNIVHI 594
           G+     T  +F+P R    R   E  S   CGL + P+I +K  +T   V +
Sbjct: 354 GIDDFQRTDVHFRPTRANLDRIPKEAKSARSCGLNQLPSIPQKQRNTIETVSL 406


>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
          Length = 794

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 131 PFTVFTVFYSIF*KFHINNNIS*VSYICFLYIKSHNLAEII*RCWFYIKAYVGLVCVSVW 310
           P TV +   S++ KFH N N++   ++   Y  + +   I+    F     +GL+ V V 
Sbjct: 711 PGTVTSSESSMYIKFHSNGNVTAAGFMA-TYTSAWSTRTIVLIAVFSCAGVIGLIAVLVA 769

Query: 311 C 313
           C
Sbjct: 770 C 770


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,651,878
Number of Sequences: 59808
Number of extensions: 352457
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)