Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30332
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    77   1e-15
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.39 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   3.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.8  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   6.3  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.4  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 40/84 (47%), Positives = 55/84 (65%)
 Frame = +3

Query: 258 DIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGR 437
           ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  
Sbjct: 67  NLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILAN 124

Query: 438 FKELQFFTGESMDCDGMVAMMEYR 509
           FK+  F+ GESMD D MV +M YR
Sbjct: 125 FKDYDFYIGESMDPDAMVVLMNYR 148



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +1

Query: 61  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 237
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 238 SAVES 252
              E+
Sbjct: 60  EGTET 64


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 401
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 98   ISSPVIMSL*IFILMDWRRLKII 30
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 120 HFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 10
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 199 FNPSAEEADEGTDSAVESGLT*S*TTG*SKHTPSVTRNPTHCTSKT 336
           +NPS    D G    V+S  T S  T     T S+T  PT  ++ T
Sbjct: 826 YNPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 455 ELKFLKPAEDVFHYFVHVCFKYFNLVR 375
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 530 VFAYHQSPIFHHGNHAITIHRLPSKELKFLKPAEDVFH 417
           V   H+  IFH GNH         ++LK +  A D+ H
Sbjct: 363 VLEVHEDFIFHEGNH--------FRQLKLILEANDILH 392


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 309 KSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGM 488
           KS  L    ++ K  A LE    D+    +T  + + +++   FK  +F++  S   DG+
Sbjct: 212 KSSCLLTLSFLFKQTADLENLETDKKIDKQTFKSSLYENLSTLFKSDEFWSLVSSPQDGV 271

Query: 489 VAMMEYRTLMVRKY 530
              +    L++ KY
Sbjct: 272 TVSLSDLLLIILKY 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,422
Number of Sequences: 5004
Number of extensions: 50407
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)