Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30332
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 64 8e-11
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 35 0.043
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 1.6
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 3.7
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 3.7
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 4.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 6.5
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 8.6
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930... 27 8.6
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 8.6
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 64.1 bits (149), Expect = 8e-11
Identities = 37/85 (43%), Positives = 50/85 (58%)
Frame = +3
Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILG 434
VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+ K +LG
Sbjct: 68 VDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLG 123
Query: 435 RFKELQFFTGESMDCDGMVAMMEYR 509
+ K+LQFF GESM DG + Y+
Sbjct: 124 KLKDLQFFVGESMHDDGGLVFAYYK 148
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +1
Query: 61 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 231
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 232 TD 237
D
Sbjct: 60 VD 61
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -1
Query: 518 HQSPIFHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 369
H+ FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 240 HRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 300 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 473
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 474 D 476
+
Sbjct: 1195 E 1195
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 273 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 452
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 453 FFTGE 467
+ E
Sbjct: 237 VLSKE 241
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 512 SPIFHHGNHAITIHRLPSKELKFLKPAEDVFHYFVH 405
+P+ HHG+H H ++ + PA+ HY VH
Sbjct: 346 APMHHHGHHHHHHHHHGHEDSRHSAPAQAPVHYPVH 381
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 375 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 277
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 166 TRAQGDIQIEGFNPSAEEADEGTDSAVES 252
TR+ +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 324 YLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGR 437
YL+D ++ KL EK D E+ + + + M ++LG+
Sbjct: 253 YLEDSKNEVYMKLAEKRVDCQELSEADFEQAMLEVLGK 290
>06_01_1128 +
9300144-9300273,9300340-9300472,9300585-9300656,
9300783-9300926,9301453-9301524,9301584-9301677,
9301782-9301928
Length = 263
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 8 EKPFFRFLLFLIASNPS 58
E PFF FLL L++S+PS
Sbjct: 2 EAPFFFFLLLLVSSSPS 18
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 97 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVE 249
+FS VDE I +E+ + G+I ++GF G D+AVE
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVE 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,528
Number of Sequences: 37544
Number of extensions: 302385
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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