Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30332
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05540.1 68416.m00607 translationally controlled tumor family...    56   1e-08
At3g16640.1 68416.m02127 translationally controlled tumor family...    56   2e-08
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    34   0.063
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.58 
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    28   5.4  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   7.2  
At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein co...    27   9.5  

>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILG 434
           VDI+   RL E  +F DKK + +++K Y+K+L  KL+    +  E+FK ++    K ++ 
Sbjct: 55  VDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMS 110

Query: 435 RFKELQFFTGESMDC-DGMVAMMEYR 509
           + K+ QFF GESM+  +G +    YR
Sbjct: 111 KLKDFQFFVGESMEGEEGSLVFAYYR 136



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +1

Query: 61  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSA 213
           M +Y+DI+TGDE+ SD++  K ++  +++EV G+  +  +G  + EG +  A
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEGG-EDEGVDDQA 51


>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
 Frame = +1

Query: 61  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 231
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE   DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 232 TDSAVE 249
            D + +
Sbjct: 60  VDDSTQ 65



 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 34/85 (40%), Positives = 44/85 (51%)
 Frame = +3

Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILG 434
           VDIV   RL E   + DKK +  Y+K Y+K L  KL E+  DQ  VFK  +    K +L 
Sbjct: 68  VDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLP 123

Query: 435 RFKELQFFTGESMDCDGMVAMMEYR 509
           R  + QFF GE M  D  +    Y+
Sbjct: 124 RLSDFQFFVGEGMHDDSTLVFAYYK 148


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 88  GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 255
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G  S +  G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 333 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 476
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 171 SRHQPTGHFVNNFIDQFHFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 16
           SRHQP+   V    D        E   T+ + + +LHFDG     N  N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 405 MNKVMKDILGRFKELQFFTGE---SMDCDGM 488
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


>At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 637

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -1

Query: 584 SNI*NSLLLDH-V*KTS*LVFAYHQSPIFH--HGNHAITIHRLPSKELKFLKPAEDVFHY 414
           S + + +L +H + K + ++ +Y  +PI    H NHA+++H L    L FL   +     
Sbjct: 395 SRVLSEILAEHPLKKNTRMLESYFTAPILEDEHNNHAVSVH-LAWLILIFLCKLDIKAES 453

Query: 413 FVHVCFKYFNLVRRLLF 363
           +  V   Y  LV  + F
Sbjct: 454 YKDVSLSYLFLVNNIQF 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,350
Number of Sequences: 28952
Number of extensions: 255347
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)