Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30331
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)                       31   0.32 
SB_14885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.97 
SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1)             29   1.3  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  29   1.3  
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)              27   3.9  
SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)                   27   5.2  
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_55365| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     27   6.8  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     27   6.8  
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)                       26   9.0  

>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 675

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 231 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSYGTFSS 124
           R C+ P CPEWT   W     +  GG      T SS
Sbjct: 254 RKCQLPACPEWTVGKWSECSRTCGGGISARTVTCSS 289



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = -3

Query: 231 RSCRRPECPEWTSRIWKVHEAS*NGGFQLS--YGTFSSCTARHGGRPRAY*RWCR-RKCD 61
           R C   ECP W S  W+    +   GFQ    Y T SS       +P +  R C  R C 
Sbjct: 404 RVCALGECPTWKSGPWEKCSKTCGVGFQARSVYCTASSVDKCDEKKPSSR-RQCNIRPCP 462

Query: 60  R 58
           R
Sbjct: 463 R 463



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 249 SQKQCYRSCRRPECPEWTSRIW 184
           ++ +  + C  P+CP W S+ W
Sbjct: 602 TKPEVVKLCELPDCPSWLSQEW 623


>SB_14885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 113 RAVQLENVP*--ES*KPPFQLAS--CTFHIREVHSGHSGLR 223
           R V  ENVP   ++ KPPF+  +  CT  +R    G+SGL+
Sbjct: 39  REVAKENVPLPNKAEKPPFESGTFTCTLRMRGARGGYSGLK 79


>SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1)
          Length = 406

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = -3

Query: 186 WKVHEAS*NGGFQLSYGTFSSCTARHGGRPRAY*RWCRRKCDRI------PRSPQ-RRVA 28
           +KV+  +  GG  L    FSSCT+    +P  Y      KC +       P SP  R+V+
Sbjct: 224 FKVYRKNLTGGVGLEIKVFSSCTSILNSKPNPYREKTVEKCCKTTRGQVDPSSPDARKVS 283

Query: 27  TQRFA 13
            +R A
Sbjct: 284 LRRVA 288


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 225 CRRPECPEWTSRIWKVHEAS*NGGFQLSYGTFSSCTARHG 106
           C + ECP WT+  W    ++   G +     F SC  R G
Sbjct: 49  CEKGECPRWTAGAWSECSSTCGSGVRT---RFVSCKPRDG 85


>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
          Length = 375

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 120 YSSKMFRKRVENLHFSLPHVPSIFG 194
           Y+ K  R+++E+ H  +PH  S+FG
Sbjct: 44  YAIKNTRRKMEDKHVIMPHFNSLFG 68


>SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)
          Length = 227

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 130 KCSVRELKTSISACLMYLPYSGGP 201
           K  ++EL TSI+ C   LP +G P
Sbjct: 97  KKEIQELNTSINTCQSQLPATGAP 120


>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 70  SSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMYLPYSG 195
           S  P  + P+S   T   A  C +  L T++ AC + LPY G
Sbjct: 517 SLRPFKLAPFSPLTTALQA--CYLLFLTTTLQACPLLLPYYG 556


>SB_55365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 301 RARIKNSLRCIHFCLIXASAINR 369
           RAR+K   RC H CL   S + R
Sbjct: 58  RARVKERKRCGHNCLTTTSEVGR 80


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 172 LMYLPYSGGPFR-AFWPSTRPIALLLRTSPRRNRL 273
           L Y PY   P   ++WP TRP      TS  RN L
Sbjct: 349 LSYWPYKSYPNALSYWPYTRPSQTRGMTSSCRNSL 383


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 172 LMYLPYSGGPFR-AFWPSTRPIALLLRTSPRRNRL 273
           L Y PY   P   ++WP TRP      TS  RN L
Sbjct: 333 LSYWPYKSYPNALSYWPYTRPSQTRGMTSSCRNSL 367


>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2214

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 147  LSYGTFSSCT-ARHGGRPRAY*RWCRRKCDRIPRSPQRRVATQRFATSXW 1
            LSYG +S    A H  R R   RW RR+  + P S +++   Q+     W
Sbjct: 1032 LSYGVYSPVQKAYHLSRRR---RWVRRRDLKHPESTKKQEHFQKLLLEGW 1078


>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
          Length = 1604

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 224 VEGQNALNGPPEYGRYMRQAEMEVFNSLTEHFRAVLHVM 108
           V G+N     PE GR   Q  +   N       +VLHVM
Sbjct: 652 VNGRNVTVDSPELGRVTAQGSVSPANVKLIRVESVLHVM 690


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,734,772
Number of Sequences: 59808
Number of extensions: 240508
Number of successful extensions: 665
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)