Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30331
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   3.4  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    26   7.9  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 255  GCSQKQCY-RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 139
            G  QK+   R C R  CP W    W     S +GG ++ +
Sbjct: 1060 GREQKEATERECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 255  GCSQKQCY-RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 139
            G  QK+   R C R  CP W    W     S +GG ++ +
Sbjct: 1060 GREQKEATERECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 69  FVGTSVNRPLVYHHDVQYSSK 131
           F  + +NR  VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 111 DVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANI 254
           D+Q  ++M   +V     S    P  F     G +AFDK YS A+A +
Sbjct: 634 DLQKVTQMAYSQVVKFGMSEKVGPLSFETPAPGEMAFDKPYSEATAQL 681


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,547,570
Number of Sequences: 27780
Number of extensions: 171871
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)