Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30330
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 27 1.2
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 25 6.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.4
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 307 ICLILKIMCRRRHYHFLIVLPLGLNLW*HLSWW-KELAPHRRHNEESLSS 453
+ + L + + H LI+ L + LW L+W+ ELA R +N+ +SS
Sbjct: 32 VAVFLGLYIGTKSIHCLILFFLAICLWLSLTWFLVELAHARVNNDLQMSS 81
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 84 CSGGNVAHSVHCNKKIVTSIARIYVYF 164
C+GG + H +K I ++A Y+YF
Sbjct: 117 CNGGFLVSPSHRSKGIGRNLANAYLYF 143
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 454 VTTATLRYVDDEEPTPSTSSGATIDLIQGVALLEN 350
+ A R VD+ EP P S +I+ + +++ ++
Sbjct: 825 IADALSRIVDETEPIPKDSEDNSINFVNQISITDD 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,249
Number of Sequences: 5004
Number of extensions: 32313
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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