Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30330
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38...    27   8.5  
04_03_0718 + 19005460-19005767,19005854-19006370                       27   8.5  
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042...    27   8.5  

>10_01_0030 -
           386008-388056,388166-388360,388931-389062,389167-389538,
           389753-389894,392274-392533,392737-393015,394796-394939
          Length = 1190

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 216 RRKLKKREEFVKCLGVINKIQLKVK-KCI*KNMLNIKNYVSPSSLSFSNSATP 371
           RR+ K+RE+ ++      K +LK K K   K  + +K Y+  SS   SNSATP
Sbjct: 528 RRRTKEREKKLR-----RKERLKEKEKEKEKIPVQLKPYIGTSSSPLSNSATP 575


>04_03_0718 + 19005460-19005767,19005854-19006370
          Length = 274

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 55  KQHVSWQGFGVVGVMSRIVYIATKKLSLLLPAYM 156
           ++ V+W  FG    ++ +VY +T  L  L+P ++
Sbjct: 201 QEAVAWMWFGRYLAVANLVYFSTNLLVFLIPKFL 234


>01_05_0127 -
           18401461-18401464,18401868-18403876,18404060-18404237,
           18404381-18404958,18405609-18405611
          Length = 923

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 19  NSQKPHSTT*YSKQHVSWQGFGVVGVMSRIVYIATKKLSL 138
           NS +P+     S     W+GFG   +++ I  +A +K S+
Sbjct: 22  NSDRPYYQGGQSIYFDGWKGFGTSAILADIAELARRKKSM 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,225
Number of Sequences: 37544
Number of extensions: 189317
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)