Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30330
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   1.6  
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)                   29   2.8  
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 27   8.7  
SB_22756| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_42851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = +3

Query: 105  HSVHCNKKIVTSIARIYVYFILLNFLFAII-------YF*ACVFRRKLKKRE 239
            H V C    V +I  I +  +L NFLFA+I        F +C    K+ KRE
Sbjct: 1034 HVVQCVFVAVKTIGNIMLVTVLFNFLFAVIGVQLFKGTFFSCTDAEKITKRE 1085


>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
          Length = 1106

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 63  RKLARFWCSGGNVAHSVHCNKKIVTSIARIYVYFILLNF 179
           R L+ FW S    + S H N  +V ++ R  V  + + F
Sbjct: 323 RSLSGFWFSSSRFSRSSHANNTVVNNVGRNLVSRLKITF 361


>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 439 LRYVDDEEP--TPSTSSGATIDLIQGVALLENDSDDG 335
           ++Y+ +  P    ST   A  DLI G+ L++N+S DG
Sbjct: 199 VQYIVEVHPGELSSTDMAAMFDLIGGLLLVKNESFDG 235


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 87  SGGNVAHSVHCNKK-IVTSIARIYVYFILLN 176
           SGGNV H VH  +K +++ I    VY+   N
Sbjct: 305 SGGNVTHFVHAEEKGLISLIKDEIVYYYQFN 335


>SB_22756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 170 IKFFICHNLFLSLCV*KKVKEKRGIREVFRCYK 268
           +  F+C   FLSL V  + ++  GIR  +RC+K
Sbjct: 61  VGIFVCTEEFLSLTVCPRHRDSYGIR--YRCHK 91


>SB_42851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 170 IKFFICHNLFLSLCV*KKVKEKRGIREVFRCYK 268
           +  F+C   FLSL V  + ++  GIR  +RC+K
Sbjct: 136 VGIFVCTEEFLSLTVCPRHRDSYGIR--YRCHK 166


>SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 170 IKFFICHNLFLSLCV*KKVKEKRGIREVFRCYK 268
           +  F+C   FLSL V  + ++  GIR  +RC+K
Sbjct: 50  VGIFVCTEEFLSLTVCPRHRDSYGIR--YRCHK 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,884
Number of Sequences: 59808
Number of extensions: 241764
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)